Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00977
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.46
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.61
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.4
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 3.2
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 4.3
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 5.6
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.6
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 5.6
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.5
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 9.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.9
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 9.9
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 308 RLLNQSTCRSGSCSPTRFRQAFH 240
RLLNQS C GS ++F Q FH
Sbjct: 1002 RLLNQSICSLGSSFLSKFSQKFH 1024
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 143 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 51
AR F +F V+ N DCN TPH +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 645 HSFSTSSSAHILSLAR*CVQCRFVTTNAVSIGIAPTTVTLVRPRRSGAHSLP 490
HS S+SSS+ S +R F+TT + S I+ TVT S + +P
Sbjct: 218 HSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP 269
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 617 TFFLWLDNVFSAGSSLQMPYPSALHLQLLHWFDHDDPERI 498
TF WL FS G + ++ Y LHL HW DH + RI
Sbjct: 281 TFKGWL---FS-GMAFRLVYDMGLHLDPDHW-DHSEESRI 315
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 63 EMRCLIAICFIVLARHCESGALKCSP 140
+M +A+ I++ RH S AL+CSP
Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 446 ACRRSSTPKKFELIQGRECAPDRRGRTSVTVVGAMPMDTAFVVTNLH*THYRAKERMCAE 625
ACR+ ST + F G + ++ + V ++ AF+ +N+ + ++E +
Sbjct: 100 ACRKLSTERFFYSPNGIDEMKKQQQFKKIPTVSITEVEPAFIPSNMEQALF-SEEPFVIQ 158
Query: 626 DDVENECN 649
DD+ ++ N
Sbjct: 159 DDLSHQIN 166
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/75 (20%), Positives = 36/75 (48%)
Frame = -2
Query: 567 NAVSIGIAPTTVTLVRPRRSGAHSLPWISSNFLGVDDLLQASKEHRPRPLSKQTQVLQSL 388
NA+ G + T+ + R+G +SL ++ + +DD+ + +SK + ++L
Sbjct: 16 NAIIHGRVASKKTIKKQLRNGKYSLKRLAEKGIHLDDIAMEIDNASKKNISKDKSLNENL 75
Query: 387 WKEVPG*QRTGSVNI 343
+ + ++ +NI
Sbjct: 76 FGKTEAGKQKDFMNI 90
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 371 PGTSFQRDCNTCVCLDNGL 427
P TSF D N CV D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 86 LFYRFGATLRKWS 124
+FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 354 SVNII*SQLSCLKHSATPESEHLQKWQLLSHSVPPGI 244
S +++ L LKH P+ + + W LL ++ GI
Sbjct: 165 SFDVVQQPLEQLKHPTKPDLKPVSAWNLLPNTSMAGI 201
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +3
Query: 111 CESGALKCSPGTEGPCAAEQESKDKPSQITTDDAS-----AVQEMQSEVECLAEPSGRAT 275
C+ SPG E P E + P +I DD S A +E+ + L + +G
Sbjct: 354 CDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELLDVIANLQDETGVTR 413
Query: 276 ATSAG 290
+ G
Sbjct: 414 IANLG 418
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 425 LGLCSLDACRRSSTPKKFELIQGRECAPDRRGRTSVTVVGAMPM 556
L L +L CR S K E+ G +CA G VTV +
Sbjct: 89 LALQALKHCRESLPNKSIEIDMGNQCA---SGLADVTVASVFSL 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,523
Number of Sequences: 5004
Number of extensions: 63286
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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