Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00977
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 33 0.21
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 33 0.27
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 31 1.1
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 1.9
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 30 1.9
12_01_0642 + 5414964-5415410,5415535-5416677 29 2.5
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 3.3
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 4.4
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 28 5.9
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 5.9
01_06_1803 + 39985439-39985701,39986582-39987971 28 5.9
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 7.7
>07_03_0896 + 22373348-22374946
Length = 532
Score = 33.1 bits (72), Expect = 0.21
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = +3
Query: 108 HCESGA-LKCSPGTEGPCAAEQE--SKDKPSQITTDDASAVQEMQSEVECLAEPSGRATA 278
HC +GA CSPG PCA + D+P++ + A++ + L S A
Sbjct: 70 HCTAGADPSCSPGAASPCALPPGAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGC 129
Query: 279 TSAGALIQE-SPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTLASA*ITVWAYA 437
+ G L+ + S GR K+ L++L +S A G++T S VWAYA
Sbjct: 130 LAGGFLLTTLADSLLGRR---KMLLVSLASMSVA----GVLTAFSP--NVWAYA 174
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 147 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALIQESPSA*G 323
E P A ES+DK ++ +A E ++V + ATAT + AL+++ A G
Sbjct: 642 EVPVTASSESEDKEPAAVPEEVAASSEKTADVAVAGAEASTATATISPALVKQLREATG 700
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 132 CSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATS 284
CS TE P AA + D S+ D V + VEC++ RA AT+
Sbjct: 357 CSSSTEAPAAAAMDGADNHSKSMVKD-QEVNMICGLVECVSLEPSRARATT 406
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 99 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 224
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/84 (21%), Positives = 34/84 (40%)
Frame = +2
Query: 104 ATLRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGTEWESNCHF 283
A + +W P M++WH + +A++ Q ++ + G G+ E CH
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQCDNGQKITEIKFASFGTPQG-SCGSYTEGGCHA 726
Query: 284 CRCSDSGVAECLRQDSCDQIIFTE 355
+ D C+ Q+ C + E
Sbjct: 727 HKSYDIFWKNCVGQERCGVSVVPE 750
>12_01_0642 + 5414964-5415410,5415535-5416677
Length = 529
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 126 LKCSPGTEGPC-AAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALI 299
L+C PG C +D PS +TT A + VE +A + ++ G L+
Sbjct: 32 LRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLV 90
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 447 ASKEHRPRPLSKQTQVLQSLWKEVPG 370
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 312 SATPESEHLQKWQLLSHSVPPGIPLPTAFLGRQTR 208
++ PE E +K SH VPP IP P + R R
Sbjct: 362 TSQPEGERKKKRPPRSHRVPPAIPSPASLRPRIRR 396
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 28.3 bits (60), Expect = 5.9
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = -2
Query: 594 CVQCRFVTTNAVSIGIAPTTVTLVRPRRS----GAHSLPWISSNFLGVDDLLQASKEHRP 427
CV T AV + IAP + +V P+ S GA ++ + ++ HR
Sbjct: 156 CVAGSSSTPVAVPLNIAPEMLGVVSPKNSLSILGAAPSMSTAAAPSSASTGVALNRPHRL 215
Query: 426 RPLSKQTQVLQ-SLWKEVPG*QRTGSVNII*SQLSCLKHSATPESEHLQ 283
PL K T V++ E+P ++ G V + + + S++P S L+
Sbjct: 216 HPLDKGTAVMEDETHHELPSSKKKGVV--VLQSVPTQQQSSSPSSSKLR 262
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 113 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 205
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>01_06_1803 + 39985439-39985701,39986582-39987971
Length = 550
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 179 RQTESDNNR*RVCRPRN-AVGSGMPGGTEWESNCHFCRCSDSGVAECLRQDSC 334
+Q SD N +PRN + +G P G W NC D VA QD C
Sbjct: 366 KQMLSDENNADTSKPRNQSRDNGFPSGIIWHRNCE-ALSRDPPVAPL--QDDC 415
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 353 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 475
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,391,246
Number of Sequences: 37544
Number of extensions: 488946
Number of successful extensions: 1584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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