Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00977
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 33 0.21
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.85
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 31 0.85
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 30 1.5
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 1.5
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 29 4.5
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 287 RCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDAC 451
R + G +C+++ C I + + PG +DC CVC D L C+ C
Sbjct: 224 RVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKDGQLTNCTGQKC 276
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 311 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 469
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 44 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 100
>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
Length = 338
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 275 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 451
CH CS SG+ C + SC I + C+PG T +C C + G S A
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272
Query: 452 RRSSTPKKFELIQGR 496
SS +K GR
Sbjct: 273 TASSYLEKLRPSNGR 287
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 311 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 469
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 1018 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 1074
>SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 129 KCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALIQES 308
KC+ G E A + ES + D A+A + + E LA G+A +Q S
Sbjct: 141 KCAAGKESETAGQLESVKHQLSMQRDQATAALKERDEFAQLAVDRGKALKEKQQENVQLS 200
Query: 309 PS 314
PS
Sbjct: 201 PS 202
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +3
Query: 102 ARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATAT 281
A+H G K P E P A Q + KP ++ D +SA +Q+ + P ++
Sbjct: 393 AQHLHPGHNKTLPMQEDPAIATQPVQPKPQEV--DSSSAGSSVQTSNDSSPAPQEDDKSS 450
Query: 282 SAGALIQESPSA 317
SA + PS+
Sbjct: 451 SATEEYKSEPSS 462
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = +2
Query: 377 TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAPDR 514
T+ + DCNTC C+ +C D C SST G C P +
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVPKK 1244
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 374 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPDRRGR 523
G DCN+CVC G +C+ C SS K L+ E A ++ R
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQAKEKLER 304
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Frame = +3
Query: 117 SGALKCSPGTEGPCAAEQESKDKPSQIT-----TDDASAVQEMQS-EVECLAEPSGRATA 278
+ A + SP ++ A ++ + + +T T SA QE +S +V + + S +
Sbjct: 1253 TSATQESPSSQVTSATQESRYSQVTSVTQEPPSTQVTSATQESRSSQVTSVTQESRSSQV 1312
Query: 279 TSAGALIQESPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTL 404
TSA QESPS+ +A + + V+Q PPS + ++
Sbjct: 1313 TSA---TQESPSSQVTSATQESRYSQVTSVTQEPPSSQVTSV 1351
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 598 IMCSVQVRHYKCRIHRHCT--YNCYTGSTTTIRSAF 497
+ CS +V++Y CR R C Y Y G R +
Sbjct: 61 LKCSCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 96
>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 219 VQEMQS--EVECLAEPSGRATATSAGALIQESPSA 317
+Q++ S EVEC +P R AG L+ PSA
Sbjct: 476 IQKLMSICEVECTVQPMDRVRVCIAGLLVLARPSA 510
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 576 VTTNAVSIGIAPTTVTLVRPRRSG--AHSLPWISSN 475
V S G+APT + LV+P R+ H +P+ + N
Sbjct: 778 VKVKVASKGVAPTRLKLVKPPRTSIPQHPMPYAAKN 813
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +2
Query: 140 WHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGTEWESNCHFCRCSDSGVA 310
W RRPM R+R R + SD R V R R A + SN DSGV+
Sbjct: 1078 WVRRPMPQRSRFTR-SSSDGVRQLVMRSRQASVTSCDRRISICSNGSLNESEDSGVS 1133
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 111 CESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEP--SGRATATS 284
CE + + T A Q+ +KPS T+ +A S + AE + ATA+S
Sbjct: 1214 CEESSCNKAYTTAANLRAHQKRHEKPSPATSSKKTA-DPTTSTFDSGAETLHTDYATASS 1272
Query: 285 AGALIQESPSA 317
AG+L+ SA
Sbjct: 1273 AGSLVDSDISA 1283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,606,747
Number of Sequences: 59808
Number of extensions: 577188
Number of successful extensions: 1755
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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