Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00977
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73800.1 68414.m08544 calmodulin-binding protein similar to c...    29   2.1  
At1g03120.1 68414.m00289 seed maturation family protein similar ...    29   2.1  
At3g59050.1 68416.m06582 amine oxidase family protein similar to...    29   2.8  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    29   3.7  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    29   3.7  
At4g01000.1 68417.m00135 ubiquitin family protein low similarity...    28   4.9  
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain...    28   4.9  
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain...    28   4.9  
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain...    28   4.9  
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp...    27   8.5  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    27   8.5  

>At1g73800.1 68414.m08544 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 207

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 521 DHDDPERILCPGSAQTSWELTIFYRHPRSIGPDRYLSR 408
           D D+  +IL PG +   WE+T+ +     +G   Y+SR
Sbjct: 40  DVDELRQILGPGMSDRKWEVTLKHARECILGNKLYISR 77


>At1g03120.1 68414.m00289 seed maturation family protein similar to
           embryonic cell protein [Daucus carota] GI:18337;
           contains Pfam profile PF04927: Seed maturation protein
          Length = 182

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 159 AAEQESKDKPSQITTDDASAV--QEMQSEVECLAEPSGRATATSAGALIQE 305
           AAE+   DK   +T++DA AV   E++S  E    P G A + SAGA + +
Sbjct: 132 AAERLPGDKV--VTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQ 180


>At3g59050.1 68416.m06582 amine oxidase family protein similar to
           polyamine oxidase (EC 1.5.3.11) precursor - Zea mays
           [SP|O64411]; contains Pfam profile PF01593 amine
           oxidase, flavin-containing
          Length = 488

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 644 IHFPHRLRRTFFLWLDNVFSAGSSLQMPYPSALH 543
           ++ PH L     + LDN+F AG +    YP ++H
Sbjct: 412 VNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVH 445


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 589 SVQVRHYKCRIHRHCTYNC 533
           S QV HY C I  +C Y C
Sbjct: 630 SPQVEHYDCMIELYCKYGC 648


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 568 KCRIHRHCTYNCYTGSTTTIRSAFSAL 488
           KC I+ HC +N Y  ST+T +   S L
Sbjct: 286 KCDIYNHCGFNGYCDSTSTEKFECSCL 312


>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
           SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
           profile PF00240: Ubiquitin family
          Length = 415

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 165 EQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRA 272
           E+E  D P  +  DDA+ V +   ++E + + SG A
Sbjct: 279 EEEMNDLPVSVAVDDANTVADEMDQLEKVEKSSGDA 314


>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 144 TEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALIQESPS 314
           +  P  +E++  + P       AS      +  E  + P+G  TA +    + ESPS
Sbjct: 299 SRSPVYSERDGGETPQVTAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPS 355


>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 144 TEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALIQESPS 314
           +  P  +E++  + P       AS      +  E  + P+G  TA +    + ESPS
Sbjct: 299 SRSPVYSERDGGETPQVTAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPS 355


>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 144 TEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAEPSGRATATSAGALIQESPS 314
           +  P  +E++  + P       AS      +  E  + P+G  TA +    + ESPS
Sbjct: 299 SRSPVYSERDGGETPQVTAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPS 355


>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein weak similarity to
           spliceosome-associated-protein 114 [Echinococcus
           multilocularis] GI:11602721; contains Pfam profile
           PF01805: Surp module
          Length = 285

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 461 TIFYRHPRSIGPDRYLSRRKCYNPSGRRC 375
           T F    RS     +LSRR CY P  +RC
Sbjct: 107 TSFRTRVRSFTTSLWLSRRGCYFPVEKRC 135


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 115 SQCRAKTIKQIAIKHLISLNPQSQHCLARERSTSQRSQ 2
           S+C   ++ +  IKH++ L   SQH     +S S + Q
Sbjct: 583 SKCSIDSLLECTIKHMLFLQSVSQHADKLTKSASSKMQ 620


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,494
Number of Sequences: 28952
Number of extensions: 359649
Number of successful extensions: 1119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)