Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00976
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.1  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   1.9  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    27   3.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   4.4  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = -1

Query: 412 IFYVLVVLSRILQL*NKNLGEAFEILILIYIAFY--QHCLYN--THACQSLYSNSTLHYH 245
           I YV   +   LQ   K L    + LIL  I+ +  QH L+   +HA +SLY ++     
Sbjct: 391 ITYVKNYMEESLQKTYKPLPNLLQYLILNSISIFLLQHPLFAPLSHAIESLYGSTDAEAL 450

Query: 244 SWSEELSLVMS*FNIVCLS 188
             ++E  ++M    + CLS
Sbjct: 451 VATDEQDILMILICVYCLS 469


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  SDDGCNSPRECFEPGYPSAGQVEASGP 166
           S    N P + F+P YP AGQ++ + P
Sbjct: 16  SSGNSNIPPQGFQPVYPVAGQLDNTAP 42


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 51  NEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDKWKRQVREQRRNIYDRHTMLN*LMTKLN 230
           N DDD P P  ++ +G       + +V+   +  K      + N  D+   LN    K +
Sbjct: 531 NSDDDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQS 590

Query: 231 S 233
           S
Sbjct: 591 S 591


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 42   EHTNEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDK 149
            E +N+ DD P   TS +    P  N +NR TH  +K
Sbjct: 904  ESSNDIDDRP-SSTSPSTLKNPSINSINRQTHDVEK 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,334
Number of Sequences: 5004
Number of extensions: 55348
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)