Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00976
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23510-8|ABC71804.1| 128|Caenorhabditis elegans Hypothetical pr... 61 8e-10
U23510-7|AAC46785.1| 261|Caenorhabditis elegans Hypothetical pr... 61 8e-10
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 1.8
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 29 2.4
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 29 2.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 5.4
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 5.4
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 5.4
Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z73975-1|CAA98276.1| 282|Caenorhabditis elegans Hypothetical pr... 28 7.2
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 28 7.2
Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U23510-8|ABC71804.1| 128|Caenorhabditis elegans Hypothetical
protein R12C12.6b protein.
Length = 128
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 15/84 (17%)
Frame = +3
Query: 3 DPLINKRAMA-SYQEHTNEDDDN---PIPGTSQ----------TMGAT-PRGNVLNRVTH 137
DP++ K+ ++ SYQ+H +E +DN P T T G T R NVL RV
Sbjct: 45 DPMLRKKRLSISYQQHNDEMEDNIFAAAPSTDDESSSASNSMDTQGTTRARSNVLGRVEA 104
Query: 138 QQDKWKRQVREQRRNIYDRHTMLN 209
+Q++W ++V EQRRNI++ HTMLN
Sbjct: 105 EQNRWMKKVEEQRRNIFEDHTMLN 128
>U23510-7|AAC46785.1| 261|Caenorhabditis elegans Hypothetical
protein R12C12.6a protein.
Length = 261
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 15/84 (17%)
Frame = +3
Query: 3 DPLINKRAMA-SYQEHTNEDDDN---PIPGTSQ----------TMGAT-PRGNVLNRVTH 137
DP++ K+ ++ SYQ+H +E +DN P T T G T R NVL RV
Sbjct: 178 DPMLRKKRLSISYQQHNDEMEDNIFAAAPSTDDESSSASNSMDTQGTTRARSNVLGRVEA 237
Query: 138 QQDKWKRQVREQRRNIYDRHTMLN 209
+Q++W ++V EQRRNI++ HTMLN
Sbjct: 238 EQNRWMKKVEEQRRNIFEDHTMLN 261
>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +3
Query: 9 LINKRAMASYQEHTNED--------DDNPIPGTSQTMGATPRGNVLNRVTHQQDKWK 155
L+ +R +ASY+E + DD P P S GAT R N+ +R + + W+
Sbjct: 339 LLAERVLASYREEQARELLAKHVEWDDRPDP-ISDNSGATTRSNINSRCRSRSNSWR 394
>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +3
Query: 9 LINKRAMASYQEHTNED--------DDNPIPGTSQTMGATPRGNVLNRVTHQQDKWK 155
L+ +R +ASY+E + DD P P S GAT R N+ +R + + W+
Sbjct: 339 LLAERVLASYREEQARELLAKHVEWDDRPDP-ISDNSGATTRSNINSRCRSRSNSWR 394
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIVEAVQLPLCVN--IALIFKL 616
LC+ +C+H +N++C Y FC LPL + +AL+F L
Sbjct: 1823 LCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTLLALLFLL 1873
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIVEAVQLPLCVN--IALIFKL 616
LC+ +C+H +N++C Y FC LPL + +AL+F L
Sbjct: 1823 LCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTLLALLFLL 1873
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIV--EAVQLPLCVNIALIFKL 616
LC+ +CVH NN++C + C V L L + +AL+F L
Sbjct: 2795 LCNAHGDCVHNTATNNITCVCTDGWTGPQCQVAPSNASLVLLILLALLFLL 2845
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIV--EAVQLPLCVNIALIFKL 616
LC+ +CVH NN++C + C V L L + +AL+F L
Sbjct: 3379 LCNAHGDCVHNTATNNITCVCTDGWTGPQCQVAPSNASLVLLILLALLFLL 3429
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIV--EAVQLPLCVNIALIFKL 616
LC+ +CVH NN++C + C V L L + +AL+F L
Sbjct: 2795 LCNAHGDCVHNTATNNITCVCTDGWTGPQCQVAPSNASLVLLILLALLFLL 2845
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIV--EAVQLPLCVNIALIFKL 616
LC+ +CVH NN++C + C V L L + +AL+F L
Sbjct: 3379 LCNAHGDCVHNTATNNITCVCTDGWTGPQCQVAPSNASLVLLILLALLFLL 3429
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 LCHIRSECVHKNRHNNLSCY*YCCYQDTFCIV--EAVQLPLCVNIALIFKL 616
LC+ +CVH NN++C + C V L L + +AL+F L
Sbjct: 3379 LCNAHGDCVHNTATNNITCVCTDGWTGPQCQVAPSNASLVLLILLALLFLL 3429
>Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical
protein T07G12.11 protein.
Length = 575
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 51 NEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDK 149
+E+D++PIP T + A P LN+ Q +K
Sbjct: 404 DEEDESPIPSTKKVSFAVPVVQRLNKRNEQMNK 436
>Z73975-1|CAA98276.1| 282|Caenorhabditis elegans Hypothetical
protein T06E8.1 protein.
Length = 282
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 336 SFLFILHSISIVCTIHMPVNLCIQTVHYIIIHGL 235
S LFIL++IS VC +M ++ T I++HG+
Sbjct: 14 SILFILYNISTVCHYYMRISFYYFT---ILLHGM 44
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 521 SCY*YCCYQDTFCIVEAVQLPLCVN 595
SC CY T C E ++LP+C N
Sbjct: 422 SCGVGSCYSKTTCCQEPIKLPVCSN 446
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 590 HTEEAVQLQLCKRYPDNNSISNSLNCYVYFYVHILNECDKAV---NNTESSVL*Q 435
H EEA L L +R ++S+S YFY+H L EC + N T+ S L Q
Sbjct: 78 HLEEASSLYLIERLC-REAVSSSS----YFYLHFLGECSGYILDPNFTDQSFLRQ 127
>Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical
protein F20G2.4 protein.
Length = 396
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 24 AMASYQEHTNEDDDNPIPGTSQTMGATPR 110
++ Y EHT D DN + TS A PR
Sbjct: 142 SLGRYHEHTRPDRDNSLKVTSTDYEARPR 170
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 536 CCYQDTFCIVEAVQLPLCVNI 598
CCY C +A +P C+NI
Sbjct: 1611 CCYHAKHCTRDACTVPFCMNI 1631
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 536 CCYQDTFCIVEAVQLPLCVNI 598
CCY C +A +P C+NI
Sbjct: 1600 CCYHAKHCTRDACTVPFCMNI 1620
>U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical
protein F33G12.6b protein.
Length = 680
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 3 DPLINKRAMASYQEHTNEDDDNPIPGTSQTMGATPRG 113
DP++ K + EH N+++ + P +T+ T RG
Sbjct: 387 DPVVGKFCVIKKSEHENKENAHLPPREDRTLDVTTRG 423
>U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical
protein F33G12.6a protein.
Length = 771
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 3 DPLINKRAMASYQEHTNEDDDNPIPGTSQTMGATPRG 113
DP++ K + EH N+++ + P +T+ T RG
Sbjct: 387 DPVVGKFCVIKKSEHENKENAHLPPREDRTLDVTTRG 423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,704
Number of Sequences: 27780
Number of extensions: 320425
Number of successful extensions: 912
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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