Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00976
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48980.1 68416.m05350 expressed protein                             28   6.7  
At4g03977.1 68417.m00564 hypothetical protein                          27   8.8  
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    27   8.8  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   8.8  

>At3g48980.1 68416.m05350 expressed protein
          Length = 539

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = -2

Query: 180 CDAAHGPDASTCPADG*PGSKHSRGELHPSSETFLV*GCHHPHWYAPDMMPW 25
           C A  G D  TCP D  P S  S      S  +       +  W   D+ PW
Sbjct: 99  CAAFSGNDTGTCPKDNYPTSFRSSAGEGESDRSPSATCPDYFRWIHEDLRPW 150


>At4g03977.1 68417.m00564 hypothetical protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 335 HSYLYCILSALFVQY-TCLSISVFKQYITLSFMV*GVEFSHELVQHSVSIINV 180
           H +    +    + Y T L+IS+  ++IT  ++V  V   H LV    +++NV
Sbjct: 79  HEFRILFMDHTIITYSTPLAISLLNKFITFDYIVDDVVGKHTLVDVIGALVNV 131


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 351 RPLKFSFLFILHSISIVCTIHMPVNLCIQ 265
           +P+K   LF+ +  ++VC I +  ++CI+
Sbjct: 469 KPMKKKVLFVKNGAAVVCRIQVTNSICIE 497


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 348 PLKFSFLFILHSISIVCTIHMPVNLCIQTVHYIIIHGLRS 229
           P    FLF   ++S+    H PVNL     + III    S
Sbjct: 17  PFLIFFLFCFSNLSMATLKHKPVNLVFYVYNLIIIFSSHS 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,946
Number of Sequences: 28952
Number of extensions: 277644
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)