Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00975
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035809-1|AAH35809.2| 595|Homo sapiens sialic acid binding Ig-... 32 1.8
AY358140-1|AAQ88507.1| 595|Homo sapiens SIGLECL1 protein. 32 1.8
AF282256-1|AAK71521.1| 595|Homo sapiens Siglec-L1 protein. 32 1.8
AF277806-2|AAK51233.1| 477|Homo sapiens sialic acid-binding imm... 32 1.8
AF277806-1|AAK51234.1| 595|Homo sapiens sialic acid-binding imm... 32 1.8
AY029765-1|AAK37403.1| 839|Homo sapiens zinc finger 1111 protein. 31 5.6
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 30 9.7
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 30 9.7
BC054868-1|AAH54868.1| 178|Homo sapiens nucleophosmin/nucleopla... 30 9.7
BC041067-1|AAH41067.1| 178|Homo sapiens nucleophosmin/nucleopla... 30 9.7
AY049737-1|AAL12172.1| 178|Homo sapiens nucleophosmin/nucleopla... 30 9.7
AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein. 30 9.7
AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein. 30 9.7
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 30 9.7
>BC035809-1|AAH35809.2| 595|Homo sapiens sialic acid binding
Ig-like lectin 12 protein.
Length = 595
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 346
H T+ + + T P V +R VRL+I +P +T T+ QG G
Sbjct: 336 HGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDG 377
>AY358140-1|AAQ88507.1| 595|Homo sapiens SIGLECL1 protein.
Length = 595
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 346
H T+ + + T P V +R VRL+I +P +T T+ QG G
Sbjct: 336 HGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDG 377
>AF282256-1|AAK71521.1| 595|Homo sapiens Siglec-L1 protein.
Length = 595
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 346
H T+ + + T P V +R VRL+I +P +T T+ QG G
Sbjct: 336 HGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDG 377
>AF277806-2|AAK51233.1| 477|Homo sapiens sialic acid-binding
immunoglobulin-like lectin-like short splice variant
protein.
Length = 477
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 346
H T+ + + T P V +R VRL+I +P +T T+ QG G
Sbjct: 218 HGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDG 259
>AF277806-1|AAK51234.1| 595|Homo sapiens sialic acid-binding
immunoglobulin-like lectin-like long splice variant
protein.
Length = 595
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 346
H T+ + + T P V +R VRL+I +P +T T+ QG G
Sbjct: 336 HGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDG 377
>AY029765-1|AAK37403.1| 839|Homo sapiens zinc finger 1111 protein.
Length = 839
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 146 QARHSSSIVRSRCQTR*IKCDTGGSHVTTRSSKTTSPVLKVGESRH 283
Q H +S RS + + KC G TRS+ TT V+ GE R+
Sbjct: 272 QNSHLASHQRSHTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRY 317
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 117 EAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVQ 257
+AKA+ S + + LGP + P +L+V Q+ M+++ ++PVQ
Sbjct: 229 QAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQ 275
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 117 EAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVQ 257
+AKA+ S + + LGP + P +L+V Q+ M+++ ++PVQ
Sbjct: 229 QAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQ 275
>BC054868-1|AAH54868.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 29.9 bits (64), Expect = 9.7
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 227
+ D FF+G LS +S T+ + + E + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTF--KVEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 228 L-QEAVKLPVQY*KLVNQGM 284
+ + +PV KL Q M
Sbjct: 89 HDHQEIAVPVANLKLSCQPM 108
>BC041067-1|AAH41067.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 29.9 bits (64), Expect = 9.7
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 227
+ D FF+G LS +S T+ + + E + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTF--KVEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 228 L-QEAVKLPVQY*KLVNQGM 284
+ + +PV KL Q M
Sbjct: 89 HDHQEIAVPVANLKLSCQPM 108
>AY049737-1|AAL12172.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin 3 protein.
Length = 178
Score = 29.9 bits (64), Expect = 9.7
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 227
+ D FF+G LS +S T+ + + E + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTF--KVEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 228 L-QEAVKLPVQY*KLVNQGM 284
+ + +PV KL Q M
Sbjct: 89 HDHQEIAVPVANLKLSCQPM 108
>AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein.
Length = 178
Score = 29.9 bits (64), Expect = 9.7
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 227
+ D FF+G LS +S T+ + + E + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTF--KVEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 228 L-QEAVKLPVQY*KLVNQGM 284
+ + +PV KL Q M
Sbjct: 89 HDHQEIAVPVANLKLSCQPM 108
>AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein.
Length = 725
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 117 EAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVQ 257
+AKA+ S + + LGP + P +L+V Q+ M+++ ++PVQ
Sbjct: 229 QAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQ 275
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 117 EAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVQ 257
+AKA+ S + + LGP + P +L+V Q+ M+++ ++PVQ
Sbjct: 318 QAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQ 364
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,765,204
Number of Sequences: 237096
Number of extensions: 2080308
Number of successful extensions: 4157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -