Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00975
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   4.5  
Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 215 GSHVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLV 334
           G+ +TT     TSP  + G++   R D+  PD+  TFT V
Sbjct: 167 GNKITTTLRPRTSPYKRAGDASMSREDLRSPDSVSTFTTV 206


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 111 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 233
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 80   PFIITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTGGSHVTTRSSKTTSPV 259
            P + T+  DM S+G ++IP    +  +     S   +   +  + GS  T RSS +TSP 
Sbjct: 1140 PVVSTTSGDMTSQGSTQIPGSTGSTVTQPSTGSGSTSTSGEITSQGSTQTPRSSLSTSPA 1199

Query: 260  LKVGESRHV 286
            +     + V
Sbjct: 1200 ISTSTQQSV 1208


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 629 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 510
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 280 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 378
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 280 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 378
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 456 SSRMKIMKKVNPRAKKRNVE*CQRQSCIAQEECQEMNK 569
           SS  ++ KKV    KK+  +  +RQS   +EE QE+ K
Sbjct: 6   SSEDELEKKVTKEQKKKETKSKKRQSEAVEEEKQEVKK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,672
Number of Sequences: 27780
Number of extensions: 311255
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)