Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00974
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.4  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    20   8.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.5  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 224 EHRHVHNEYGRGTCAPPTRGCWTAPTGLQTLP 319
           EH H H  YG     P       A  G+ T P
Sbjct: 22  EHPHQHQHYGAAVQVPQGGRRRAARPGVVTTP 53


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 224 EHRHVHNEYGRGTCAPPTRG 283
           EH H H  YG     P   G
Sbjct: 22  EHPHQHQHYGAAVQVPQGGG 41



 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 294 AVQQPRVGGAQVPRPYS 244
           AVQ P+ GGA  P P S
Sbjct: 33  AVQVPQGGGAVQPDPGS 49


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +2

Query: 74  ENFPGTSKDVHLWNDMNEPSVFN 142
           EN P     + +W   ++P V N
Sbjct: 434 ENLPSDKYIIQIWTTGSDPQVRN 456


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 62  RYRFENFPGTSKDVHLWNDMNE 127
           RY FE      K    +ND NE
Sbjct: 242 RYNFERLCNKLKRATRFNDFNE 263


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 153 SPCPRTVATTSHPRTV 200
           SP P  V T S PR++
Sbjct: 54  SPTPGDVPTPSSPRSI 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,263
Number of Sequences: 336
Number of extensions: 2243
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)