Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00974
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 79 4e-16
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 46 3e-06
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 42 3e-05
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 39 3e-04
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 29 0.29
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 2.7
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 25 3.6
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 4.8
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.3
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 6.3
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 78.6 bits (185), Expect = 4e-16
Identities = 37/84 (44%), Positives = 49/84 (58%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHY 181
PG+S + DFFNP ++ Y F+ F + K++ +WNDMNEPSVF GPE +M +D HY
Sbjct: 487 PGNSVWVDFFNPEAQAWWGSLYEFDRFE-SDKNLWIWNDMNEPSVFRGPETSMHRDAIHY 545
Query: 182 KPPQDGLEGLADYWEHRHVHNEYG 253
WEHR +HN YG
Sbjct: 546 -----------GGWEHRDIHNIYG 558
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVP 416
RPF+LTR+ AGT +A W GD W L S+P
Sbjct: 578 RPFILTRSFFAGTSALAANWIGDTMTTWEHLRGSIP 613
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 45.6 bits (103), Expect = 3e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
RPFLL+R+ G+ RY+A W GDN ++WS + +S+
Sbjct: 650 RPFLLSRSTFVGSGRYAAHWLGDNKSQWSDMVSSI 684
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYY 55
PG YPDF NP V +Y+
Sbjct: 457 PGFVVYPDFTNPAVLQYW 474
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 42.3 bits (95), Expect = 3e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVP 416
RPF+L+R+ G+ +Y+A W GDN + WS + S+P
Sbjct: 647 RPFILSRSTFVGSGKYAAHWLGDNYSLWSNMIFSIP 682
Score = 30.3 bits (65), Expect = 0.13
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSD-------RYRFEN-FPGTSKDVHLWNDMNEPSVF 139
PG +++PDF NP + Y+++ + + + FP LW DMNEP+ F
Sbjct: 455 PGFTTFPDFTNPETTNYWTECLMNLSAAFGYNSSFPLPYSG--LWIDMNEPTSF 506
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSD-----RYRFENFPGTSKDVHLWNDMNEPSVF 139
PG +++PDF NP V Y+ D Y F + GT +W DMNEPS F
Sbjct: 439 PGFTAFPDFTNPDVVDYWKDCLINLTYAFGS-NGTVPFSGIWTDMNEPSSF 488
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
RPF+L+R+ G+ Y A W GDN + WS + S+
Sbjct: 625 RPFILSRSTFLGSGVYGAHWLGDNHSLWSNMFFSI 659
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 29.1 bits (62), Expect = 0.29
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 168 SLGMVTSGPLKTLGS---FISFHRWTSLLVPGKFSNLYRSE*YRLTT 37
SLG+ T+GP+ +GS FI + + G F+ +Y SE Y ++T
Sbjct: 633 SLGLGTNGPVTHIGSTSLFIDGKIESFISFQGDFNEVYTSEGYAIST 679
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 35 PVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYKP 187
P+VS + ++ + N + +H+++D ++P V E P + Y P
Sbjct: 1757 PIVSNHQTEGSQMFNEISSVSSIHVYHDESQPPVEMPAESDTPLQNKLYHP 1807
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 3.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 331 PCXQAPRDTLRYGQVTI 381
PC + PR +RYG V +
Sbjct: 42 PCSEFPRQVIRYGSVVL 58
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 285 AGPRRRVYRPFLLTRAVXAGTQRYSAVWTGDNTAEWSF 398
+G + RP ++ RA+ +R A+ T +W F
Sbjct: 556 SGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGKWPF 593
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 6.3
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 8 SSSYPDFFNPVVS-RYYSDRYRFENFPGTSKDVHLWNDMNEPSVFN 142
S YPD + Y RY +N + K H+ +++ E + FN
Sbjct: 19 SEGYPDLTELIAEVESYQQRYPKQNPTNSQKIRHILDEIYEKTPFN 64
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 24.6 bits (51), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 96 RTSTCGTI*TNPVSSTVQRSPCPRTVATTSHPRTVWRGW 212
R+ST T + + RSPC +VA TS P V + W
Sbjct: 226 RSSTFSGKSTGRIPIELIRSPCSTSVA-TSEPILVSKSW 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,397
Number of Sequences: 5004
Number of extensions: 33964
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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