Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00974
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 97 4e-21
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 55 3e-08
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 51 3e-07
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 44 4e-05
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 44 5e-05
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 42 2e-04
02_03_0197 - 16249988-16250509 33 0.12
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 30 0.66
12_02_0403 - 18627246-18627557,18627904-18628836 30 0.87
01_06_0697 - 31301794-31302034,31302672-31303329,31303896-313040... 29 2.0
04_04_0734 + 27648661-27649596 28 3.5
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 27 4.6
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 27 4.6
01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629... 27 4.6
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 27 6.1
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 27 6.1
03_01_0545 - 4086692-4087591 27 6.1
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 27 6.1
10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885 27 8.1
03_02_0832 - 11623018-11623743 27 8.1
01_06_1747 + 39627938-39628441 27 8.1
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHY 181
PG+SSYPD NP + +++D++ +EN+ G++ +++WNDMNEPSVFNGPEVTMP+D HY
Sbjct: 472 PGASSYPDMLNPEIREWWADKFSYENYKGSTPTLYIWNDMNEPSVFNGPEVTMPRDAVHY 531
Query: 182 KPPQDGLEGLADYWEHRHVHNEYG 253
D EHR +HN YG
Sbjct: 532 ----------GDV-EHRELHNAYG 544
Score = 60.5 bits (140), Expect = 5e-10
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVPM 419
RPF+L+RA AG+QRY A+WTGDN+A+W L +S+PM
Sbjct: 564 RPFVLSRAFFAGSQRYGAIWTGDNSADWDHLKSSIPM 600
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVPM 419
RPF+LTRA G+QRY+A WTGDN + W L SVPM
Sbjct: 387 RPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSVPM 423
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHY 181
PG +PDF +++ + +F D +WNDMNEP+VF TMP H
Sbjct: 293 PGDCVFPDFTCKRTRTWWASLVK--DFISNGVD-GIWNDMNEPAVFKSTTKTMPVSNIH- 348
Query: 182 KPPQDGLEGLADYWEHRHVHNEYG 253
G + + H + HN YG
Sbjct: 349 ----RGDDDIGGVQNHSYYHNVYG 368
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVPM 419
RPF+LTRA G QRY+A+WTGDN + W L S+ M
Sbjct: 388 RPFVLTRAGFIGQQRYAAMWTGDNVSNWEHLHMSIAM 424
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
RPF+L+R+ G+ RY+A WTGDN A W L S+
Sbjct: 597 RPFVLSRSTFVGSGRYTAHWTGDNAATWEDLHYSI 631
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGP 148
PG+ +PDF NP + +++ F T LW DMNE S F P
Sbjct: 486 PGNVYFPDFLNPRAAEFWA--REIAAFRRTLPVDGLWVDMNEISNFVDP 532
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
RPF+L+R+ G+ RY+A WTGDN A W L S+
Sbjct: 273 RPFVLSRSTFVGSGRYTAHWTGDNFATWDDLRYSI 307
Score = 34.7 bits (76), Expect = 0.031
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHY 181
PG+ S+PDF NP + +++ F T LW DMNE S F P D Y
Sbjct: 162 PGNVSFPDFLNPRAAEFWA--REIAAFRRTLPVDGLWIDMNEISNFVDPPPLNALDDPPY 219
Query: 182 KPPQDGL 202
+ G+
Sbjct: 220 RIDNSGV 226
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
RPF+LTR+ G+ Y+A WTGDN W L S+
Sbjct: 550 RPFILTRSTFVGSGAYAAHWTGDNKGTWENLRYSI 584
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVF 139
PG +PDF NP ++ D R F LW DMNE S F
Sbjct: 412 PGPVYFPDFLNPNGVSWWIDEVR--RFHDLVPVDGLWIDMNEASNF 455
>02_03_0197 - 16249988-16250509
Length = 173
Score = 32.7 bits (71), Expect = 0.12
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Frame = +2
Query: 83 PGTSKDVHLWNDMNEPSVFNGP--EVTMPKDCRHYKPPQDGLEGLA--DYWEHRHVHNEY 250
PG H +D+ E P E + + CRH P G E R
Sbjct: 31 PGRESRSHRQHDVGEGGQLLPPRREGSNRRRCRHAPTPGRGSRSRLRLHIGEMRGSREGG 90
Query: 251 GRGTCAPPTRGCWTAPTGLQTLPAHEGRVXRHPEI 355
G G PP RG A T T+P E R R +
Sbjct: 91 GSGQLLPPRRGREAAATAAVTMPGRESRSHRQHNV 125
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 30.3 bits (65), Expect = 0.66
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 224 EHRHVHNEYGRGTCAPPTRGCWTAPTGLQTLPAHEGRVXRH 346
E HV +Y C P GC A T L+ L AH RH
Sbjct: 374 EESHVKLDYSEVICCEP--GCMKAFTNLECLKAHNKSCHRH 412
>12_02_0403 - 18627246-18627557,18627904-18628836
Length = 414
Score = 29.9 bits (64), Expect = 0.87
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 108 CGTI*TNPVSSTVQRSPCP--RTVATTSHPRT 197
CG TNPV+ P P T+AT+SH RT
Sbjct: 122 CGIFVTNPVTGETLHIPSPPLETMATSSHRRT 153
>01_06_0697 -
31301794-31302034,31302672-31303329,31303896-31304091,
31304169-31304396,31304497-31304925,31305043-31305249,
31305442-31305633,31305772-31306143
Length = 840
Score = 28.7 bits (61), Expect = 2.0
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 17 YPDFFNPVVSRYYSDRYRFENFPG-TSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYKPPQ 193
Y + F V + +RF +FPG TS D+ E + N P PKD +H PP
Sbjct: 594 YENDFLSGVGSVANSMHRFNHFPGVTSFDLSDSGSALEEAQENVP----PKDRQHMTPPA 649
Query: 194 DGLE 205
G E
Sbjct: 650 KGNE 653
>04_04_0734 + 27648661-27649596
Length = 311
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 227 HRHVHNEYGRG-TCAPPTRGCWTAPTGLQTLPAHEG 331
HR H GRG CAPP + T LQ LP +G
Sbjct: 192 HRASHMRGGRGGCCAPPPNPPPSPATPLQPLPECDG 227
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 318 LLTRAVXAGTQRYSAVWTGDNTAEWSFLAASV 413
L+ V AG +SAV TG+ T+ ++F A S+
Sbjct: 118 LVCTTVSAGILSFSAVATGNATSPFTFFATSI 149
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 420 TSARKPQGTTTPPYCHLSIPQS-ISGCLXTRPS*AGRVCRPVGAVQQPR 277
TSA + + + PP C + + +S + TRPS AG + PVG+ R
Sbjct: 1681 TSAAQARAVS-PPLCQTTRQTAGVSQQVPTRPSVAGSIALPVGSSSASR 1728
>01_06_1143 -
34862005-34862370,34862494-34862628,34862742-34862992,
34863192-34863243,34863408-34863694,34864030-34864182,
34865393-34865889,34866173-34866241,34867006-34867074,
34867486-34867560,34869341-34869412,34869499-34869570,
34869664-34869807,34870321-34870416,34870736-34870807,
34871081-34871152,34871683-34871830,34872609-34872708
Length = 909
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 345 CLXTRPS*AGRVCRPVGAVQQPRVGGAQVPRPYSLC 238
C + P+ A R+C+P + P G+QV S C
Sbjct: 337 CTNSTPARAARLCQPTSVTEAPSGQGSQVSINCSPC 372
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 20 PDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYK 184
PD + VVS Y +YR PG K +W NG + T DC +K
Sbjct: 49 PDGYVAVVSLYNYQQYRHIQSPGW-KLGWVWAKKEIIWAMNGGQATEQGDCSKFK 102
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 50 YYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYKPPQDGLEGLADYWEH 229
Y S+ +F +F +++D +W++ N P GP T +Y P + ++ + H
Sbjct: 80 YLSENEKFNDF--SNEDALVWHEANIPYAVWGPTSTRTHTLTYY--PSEAIKNNGSLYAH 135
>03_01_0545 - 4086692-4087591
Length = 299
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 261 PARHQHGAAGPRRRVYRPF 317
P RH+H AA PR R+ RPF
Sbjct: 241 PQRHRHRAASPRLRL-RPF 258
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 261 PARHQHGAAGPRRR 302
P RH+HG A PRRR
Sbjct: 13 PRRHRHGPATPRRR 26
>10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885
Length = 489
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 167 DCRHYKPPQDGLEGLADYWEHRHVHNEYGRGTCAPPT 277
DC P + L W + +V NE G APPT
Sbjct: 239 DCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPT 275
>03_02_0832 - 11623018-11623743
Length = 241
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 288 GPRRRVYRPFLLTRAVXAGTQRY 356
GPR+ V P L RA+ G +RY
Sbjct: 89 GPRQAVLYPILSLRAIGLGARRY 111
>01_06_1747 + 39627938-39628441
Length = 167
Score = 26.6 bits (56), Expect = 8.1
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Frame = -1
Query: 306 RPVGAVQQPRVGGAQVPRPYSLCTC-LCSQ*SASPSRPSWGG--L*WRQSLGMVTSGPLK 136
RP P GG + PR L T C PSR GG + Q+ S +
Sbjct: 89 RPATTTSAPATGGKEPPRHLVLSTARQCRDRKEDPSRVGRGGDHVEDGQTASTPASAQAR 148
Query: 135 TLGSFISFHRW 103
GS S RW
Sbjct: 149 ETGSERSTARW 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,769
Number of Sequences: 37544
Number of extensions: 291675
Number of successful extensions: 868
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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