Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00974
(420 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 63 8e-11
SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 41 4e-04
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28) 28 3.6
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 28 3.6
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0) 27 4.8
SB_19136| Best HMM Match : Pyridox_oxidase (HMM E-Value=8.9) 27 4.8
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 27 6.3
SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 6.3
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 6.3
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 27 6.3
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_7406| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 6.3
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 6.3
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 27 6.3
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 63.3 bits (147), Expect = 8e-11
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVPM 419
RPF+L+RA AGTQRY +WTGDN AEWS L AS+PM
Sbjct: 516 RPFVLSRAFFAGTQRYGPIWTGDNMAEWSHLKASIPM 552
Score = 44.0 bits (99), Expect = 5e-05
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 47 RYYS-DRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYKPPQDGLEGLADYW 223
RY + D+ +F N P ++ ++ + +PSVF+GPE+TM KD HY W
Sbjct: 440 RYMTWDKVKFPN-PEAMQE-NIASKGRKPSVFHGPEITMHKDTIHYGD-----------W 486
Query: 224 EHRHVHNEYG 253
EHR VHN YG
Sbjct: 487 EHRDVHNIYG 496
>SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 388
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +2
Query: 2 PGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVF 139
PG++ YPDFFNP Y++ + F LW DMNEPS F
Sbjct: 93 PGNTVYPDFFNPSTQSYWTK--QISQFHDVVPFDGLWIDMNEPSNF 136
Score = 29.9 bits (64), Expect = 0.89
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 309 RPFLLTRAVXAGTQRYSAVWTGDNTAEWSFLAASVP 416
R +++R+ + ++ W GDN A W + SVP
Sbjct: 205 RSMVISRSTFPNSGQHGGHWLGDNQATWESMYLSVP 240
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 176 HYKPPQDGLEGLADYWEH-RHVHNEYGRGTCAPPTRGCWTAPTGLQTLPAHEGRVXRH 346
+ +PPQ + Y + +H + + GRG PP+ G T +Q P G H
Sbjct: 500 YQQPPQQQQQSRGPYQQTAQHPNQQGGRGQAPPPSYGRGGPTTTVQQQPPPTGEAPAH 557
>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
Length = 1006
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 32 NPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNG-PEVTMPKDCRHYK-PPQDGLE 205
N S Y S ++FP + + ++ NEP+VF G P++ D + P D L
Sbjct: 468 NDTKSSYPSRNDPRDSFPSRNHSMDPYHHTNEPTVFRGSPQILRGPDRNSVRSDPYDSLR 527
Query: 206 GLADY 220
+Y
Sbjct: 528 RALNY 532
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 425 RPTPHGRSISEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 474
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 102 STCGTI*TNPVSSTVQRSPCPR 167
STCGT+ T+P S T+ + PR
Sbjct: 571 STCGTVRTSPASDTIPSNRGPR 592
>SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 41 VSRYYSDRYRFENFPGTSKDVHLWNDMNEPSVFNGPEVTM 160
+S Y+ + F + GTS +HL D N SV G + T+
Sbjct: 139 ISNYFFVSFLFMSNGGTSSKIHLDTDENLLSVIRGHKETI 178
>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
Length = 1048
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 292 RADGSTDPSCSRGPCXQAPRDTLRYGQVTIRRSGRS 399
RADGS S R + PR +L G + IR S R+
Sbjct: 847 RADGSIRSSSYRSSFSRGPRSSLATGPIGIRTSLRA 882
>SB_19136| Best HMM Match : Pyridox_oxidase (HMM E-Value=8.9)
Length = 312
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 174 RQSLGMVTSG-PLKTLGSFISFHRWTSLLV 88
RQ +G +T+G P+ + S HRW S+LV
Sbjct: 149 RQRMGQLTTGGPVYSSAYGASHHRWPSMLV 178
>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 27.1 bits (57), Expect = 6.3
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +2
Query: 83 PGTSKDVHLWNDMNEPSVFNGPEVTMPKDCRHYKPPQDGLEGLADYWEHRHVHNEYGRGT 262
PG + ++ N +G + ++ Y+ QD +G+A H N +G G
Sbjct: 928 PGAPRSESSFSSRNYEVYESGSALPSSREYSLYE--QDRQKGVA----HPETSNHHGNGH 981
Query: 263 CAPPTRGCWTAPTGL 307
P W AP+GL
Sbjct: 982 VLEPWAEPWAAPSGL 996
>SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 817
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 290 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 339
>SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 795
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 327 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 376
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 615 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 664
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 110 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 159
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 TSTCGTI*TNPVSSTVQRSPC--PRTVATTSHPRTVWR 206
TS GT VS T S PR+V TS PRT+ R
Sbjct: 437 TSVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGR 474
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 332 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 381
>SB_7406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 110 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 159
>SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 452
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 40 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 89
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 420 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 469
>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 5 GSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVHLWNDMNEPSV 136
GSS +P NP RYY + ++ PGT V + D+N P +
Sbjct: 804 GSSVFPLSGNPAFPRYYQAFEKPDSRPGTWLVVFI--DVNSPDL 845
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 494 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 543
>SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 436
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 92 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 141
>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
Length = 776
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 RPS*AGR-VCRPVGAVQQPRV--GGAQVPRPYSLCTCLCSQ*SASPSRPS 193
RP+ GR + P ++ R GG P S TC C Q + P RPS
Sbjct: 312 RPTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPTCHCPQRTVPPQRPS 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,489
Number of Sequences: 59808
Number of extensions: 313114
Number of successful extensions: 847
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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