Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00974
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.80 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   9.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 132 LGSFISFHRWTSLLVPGKFSNLY 64
           + SFI+   W  L VPGK + +Y
Sbjct: 188 ISSFITNGEWDLLGVPGKRNEIY 210


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 90  LARTSTCGTI*TNPVSSTVQRSPCPRTVATTSHPRTVWR 206
           ++RTST G   TN  ++    S    TV  T     +W+
Sbjct: 720 VSRTSTAGQFPTNVATTVTSMSIDQSTVIQTGANVNLWQ 758


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 224 EHRHVHNEYGRGTCAP 271
           E+ +VH+EY    C P
Sbjct: 475 EYEYVHDEYTCMDCGP 490


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 197 GLEGLADYWEHRHVHNEYGRGTCAPP 274
           G E  AD+W+   + NE      APP
Sbjct: 334 GEEEKADWWKDIMLLNEKTLAVPAPP 359


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 197 GLEGLADYWEHRHVHNEYGRGTCAPP 274
           G E  AD+W+   + NE      APP
Sbjct: 334 GEEEKADWWKDIMLLNEKTLAVPAPP 359


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 197 GLEGLADYWEHRHVHNEYGRGTCAPP 274
           G E  AD+W+   + NE      APP
Sbjct: 334 GEEEKADWWKDIMLLNEKTLAVPAPP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,667
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)