Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00973
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 41 0.001
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 38 0.010
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159... 36 0.040
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 35 0.052
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 35 0.069
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 35 0.069
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 33 0.16
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58... 32 0.49
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 31 1.1
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 31 1.1
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 30 2.0
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 29 3.4
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 29 3.4
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 29 3.4
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 29 3.4
05_04_0223 - 19192411-19192951,19193363-19193388 28 6.0
01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898... 28 6.0
01_01_0123 - 1142557-1142744,1143281-1143497 28 7.9
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +3
Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
++S+V P+ + E +LT++Q +I G + A+ WG+V D +GR+
Sbjct: 45 LLSFVGPSVQLEWKLTSHQESMITSIVFVGMLIGAYTWGVVSDNYGRR 92
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +3
Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRKSXXXXXXXXXXX 446
++S+V P R E ++ L++ +G + A WG V D +GR+
Sbjct: 234 LLSFVGPLVREEWNISAENESLLSSVVFAGMLIGASGWGFVSDKYGRRICLLFSTLFASG 293
Query: 447 XXXXQSTVPDYRLLLAARTIKG 512
+ P+Y LLA R + G
Sbjct: 294 MGFLSAFSPNYSCLLALRFLVG 315
>12_01_0210 -
1593732-1593823,1594730-1594773,1594895-1594983,
1595076-1595120,1595457-1595564,1595647-1595732,
1595872-1595959,1596159-1596335,1596531-1596606,
1596709-1596758,1596834-1596896,1597152-1597254,
1597337-1597439,1597559-1597619,1598119-1598159,
1599790-1599961
Length = 465
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
Y AG + ++M G +A FWG+V D GRK
Sbjct: 86 YYAGFLGASYMVGRSFAAIFWGVVADRIGRK 116
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 282 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
L A+ E + Y AG + ++M G +A FWG+V D GRK
Sbjct: 29 LQVAQTEEDIGNY-AGFLGASYMVGRSFAAIFWGVVADRIGRK 70
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
++S+V + + E +L+ LI G + A+ WGIV D +GR+
Sbjct: 67 LLSFVGQSVQAEWELSAQAESLITSVVFVGMLVGAYSWGIVSDNYGRR 114
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 34.7 bits (76), Expect = 0.069
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
+ AG + ++M G S+ WGIV D +GRK
Sbjct: 136 FYAGFVGASYMFGRALSSVIWGIVADKYGRK 166
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 282 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
L A+ E + Y AG + ++M G ++ FWG+V D GRK
Sbjct: 44 LHVAKKEQDIGLY-AGFLGASYMIGRCFASLFWGVVADRIGRK 85
>04_01_0056 -
579934-579993,580064-580243,580349-580507,581004-581050,
583772-583895,584093-584956
Length = 477
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 483 VCSLERCFGLKLSLHPGATSSLGCSSCRRHRPLYPRRMHWRHHRS 349
V +++ C GL+ P T C RR RP+ P WRH+ S
Sbjct: 287 VLAVDSCIGLEFEPFPTRT----CFCARRRRPIPPDNDQWRHNVS 327
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 282 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
L AR E + Y AG + ++M G ++ WG+V D GRK
Sbjct: 54 LHVARTEEDIGFY-AGFLGASYMIGRGFASILWGMVADRIGRK 95
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
+ AG + +FM G ++ WGI D GRK
Sbjct: 81 FYAGFVGASFMFGRCLTSTIWGIAADRIGRK 111
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
+ AG + + G SA WGI D +GRK
Sbjct: 84 FYAGFVGATYFLGRTISAVPWGIFADKYGRK 114
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
+ AG + ++M G ++ WG+V D GRK
Sbjct: 55 FYAGFLGASYMIGRGFASILWGMVADRIGRK 85
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGR 407
++S+V P+ + E ++ GL++ +G + A G++ D +GR
Sbjct: 52 LLSFVGPSVKAEWGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGR 98
>03_01_0265 +
2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 180 AGQSRVRPLQPECFRSVRVRFLRIRVQNCIMSYVLPAARCEL 305
+G+ R L+ CF V + LR V++ + S++L RC L
Sbjct: 479 SGEQRAALLKMVCFFLVNLILLRALVESSLESWILSMGRCYL 520
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 93 NRPENRKPHSQRHGNLTRCHRRDGG----LRNRAGQSRVRPLQPECFRSVRV 236
+R EN ++Q GN + CH + G N + P +PE S+++
Sbjct: 75 SREENDDSYTQEVGNFSECHSSEHGNSGFSANNGTSGQATPQRPELMESLKI 126
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 68 ANPK*WFRKSPRKSEAPFTEAWQPH*MPPKRWRITKPRWTKQ 193
A P W + S A +T WQ P+ R PRW +Q
Sbjct: 132 ARPTGWNAAAAPSSSASWTARWQGRRPAPRARRGGTPRWRRQ 173
>01_06_0518 +
29988613-29989193,29989596-29989622,29989759-29989891,
29990006-29990240,29990524-29990566,29990672-29990952,
29991293-29991423,29991812-29991946
Length = 521
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 108 RKPHSQRHGNLTRCHRRDGGLRNRAGQ 188
R P + RHG+ + CH G +N GQ
Sbjct: 183 RDPENGRHGSQSYCHHSPTGWKNFGGQ 209
>01_01_0123 - 1142557-1142744,1143281-1143497
Length = 134
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 311 DDIPSRIDQHGFYERWCRQCI 373
DD +R+D+ RWCR C+
Sbjct: 111 DDPYTRVDEKSALGRWCRNCV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,459
Number of Sequences: 37544
Number of extensions: 452907
Number of successful extensions: 1070
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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