BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00973 (685 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_58018| Best HMM Match : RVT_1 (HMM E-Value=1.1) 28 8.1 >SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 252 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1 Query: 85 VQKIAPKIGSPIHRGMATSLDATE-EMADYETALDKAGYGRFSRSALGACVCAFF 246 V+ + + GSP+ M + + + D+ TAL K Y R S + + A C F Sbjct: 63 VKPLLAECGSPVSTAMTRGMHVSSGNVGDFVTALLKKEYNRPSTAVVRAVECDMF 117 >SB_58018| Best HMM Match : RVT_1 (HMM E-Value=1.1) Length = 386 Score = 27.9 bits (59), Expect = 8.1 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -1 Query: 679 IVRDFKWNHHPGECRQK 629 I DFKWN H EC +K Sbjct: 216 ITEDFKWNAHVSECIKK 232 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,974,731 Number of Sequences: 59808 Number of extensions: 509650 Number of successful extensions: 1217 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1216 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1769412099 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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