Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00973
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13050.1 68416.m01626 transporter-related low similarity to a...    40   0.002
At5g13740.1 68418.m01599 sugar transporter family protein contai...    37   0.014
At3g43790.3 68416.m04680 transporter-related low similarity to S...    33   0.18 
At3g43790.2 68416.m04679 transporter-related low similarity to S...    33   0.18 
At3g43790.1 68416.m04678 transporter-related low similarity to S...    33   0.18 
At5g13750.1 68418.m01600 transporter-related                           32   0.31 
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ...    29   2.2  
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ...    29   2.2  
At1g64370.1 68414.m07295 expressed protein                             29   3.8  
At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier, p...    28   6.6  
At2g40280.1 68415.m04958 dehydration-responsive family protein s...    28   6.6  
At1g27640.1 68414.m03377 expressed protein                             28   6.6  
At1g14630.1 68414.m01739 hypothetical protein                          28   6.6  
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta...    28   6.6  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    27   8.8  

>At3g13050.1 68416.m01626 transporter-related low similarity to
           apical organic cation transporter [Sus scrofa]
           GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
           {Rattus norvegicus}; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 500

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +3

Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRKSXXXXXXXXXXX 446
           ++S+V PA +    L+  Q  LI     +G +  A+ WGIV D  GR+            
Sbjct: 43  LLSFVGPAVQSLWNLSARQESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFV 102

Query: 447 XXXXQSTVPDYRLLLAARTIKG 512
                +  P+Y  L+  R + G
Sbjct: 103 AGFLSAFSPNYMWLIILRCLVG 124


>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
           + AG +  +FM G   ++ FWGIV D +GRK
Sbjct: 78  FYAGFVGCSFMLGRALTSVFWGIVADRYGRK 108


>At3g43790.3 68416.m04680 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 484

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
           + AG +  +FM G   ++ FWG + D +GRK
Sbjct: 76  FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106


>At3g43790.2 68416.m04679 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 484

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
           + AG +  +FM G   ++ FWG + D +GRK
Sbjct: 76  FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106


>At3g43790.1 68416.m04678 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 478

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
           + AG +  +FM G   ++ FWG + D +GRK
Sbjct: 76  FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106


>At5g13750.1 68418.m01600 transporter-related
          Length = 478

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 410
           + AG +  +FM G   ++  WG+V D +GRK
Sbjct: 77  FYAGFVGCSFMLGRAFTSVAWGLVADRYGRK 107


>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 491 GS*NHQGFIIGGPATLVFTYLSDLVGVKKRQ 583
           GS   +  ++G P+T +  YL+D  G++K Q
Sbjct: 270 GSTQREPLVVGKPSTFMMDYLADKFGIQKSQ 300


>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 491 GS*NHQGFIIGGPATLVFTYLSDLVGVKKRQ 583
           GS   +  ++G P+T +  YL+D  G++K Q
Sbjct: 270 GSTQREPLVVGKPSTFMMDYLADKFGIQKSQ 300


>At1g64370.1 68414.m07295 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +3

Query: 48  KKYFFFSLTQNNG-SENRPENRKPH--SQRHGNLTRCHRRDGGLRNRAG--QSRVRPL 206
           K Y+  +  Q NG  +++  N + +  SQ  G   + H R+G  +NR G  QS+ RP+
Sbjct: 9   KDYYEVAQGQRNGYGQSQSHNHEGYGQSQSRGGYGQIHNREGYNQNREGYSQSQSRPV 66


>At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier,
           putative / a bout de souffle (BOU) / CAC-like protein
           identical to SP|Q93XM7 Mitochondrial
           carnitine/acylcarnitine carrier-like protein (A BOUT DE
           SOUFFLE) (Carnitine/acylcarnitine translocase-like
           protein) (CAC-like protein) {Arabidopsis thaliana};
           contains Pfam profile: PF00153 mitochondrial carrier
           protein
          Length = 300

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 348 MSGGVASAFFWGIV 389
           M+GGVA A FWGIV
Sbjct: 218 MAGGVAGASFWGIV 231


>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 469 TVLWAKVIAASRSNVKLRVLFLPKTSPTIPQKNALATPPLIKAMLINPAWYV--VSCSSH 296
           ++ W  V     S+    V++   TS +   K +   PPL      N +WYV    C S 
Sbjct: 329 SICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCDKKEANGSWYVPLAKCLSK 388

Query: 295 LAAG 284
           L +G
Sbjct: 389 LPSG 392


>At1g27640.1 68414.m03377 expressed protein
          Length = 147

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 87  SENRPENRKPHSQRHGNLTRCHRRDGGLRNRAGQSRVR 200
           SE     RK   ++H      HR +  L+NRAG+ R R
Sbjct: 5   SETEQYKRKAEIEKHTKEPNKHRDEAVLQNRAGRHRDR 42


>At1g14630.1 68414.m01739 hypothetical protein
          Length = 151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  NGSENRPENRKPHSQRHGNLT 143
           NG+E++P+N   HSQ H  L+
Sbjct: 30  NGAEDKPDNDLDHSQNHWGLS 50


>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 502

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 279 VLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFG 404
           +LP  R  L LT    G   +A +SG V +    G   D+FG
Sbjct: 67  LLPVIRENLNLTATDIGNAGIASVSGAVFARIVMGTACDLFG 108


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  ubiquitin-specific protease 12 [Arabidopsis
           thaliana] GI:11993471; contains Pfam profile PF00917:
           MATH domain
          Length = 1663

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 267 IMSYVLPAARCELQLTTYQAGLINMAFMS 353
           IMS V PA  C L+++ YQ+ + +  ++S
Sbjct: 257 IMSPVFPAGECNLRISVYQSVVNSQEYIS 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,272
Number of Sequences: 28952
Number of extensions: 342787
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)