Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00972
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    29   0.89 
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   2.7  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.3  

>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 24/92 (26%), Positives = 39/92 (42%)
 Frame = +1

Query: 331 KQYYYCHSSSIDTFQIPNNSYESVYLLKEYYIYLQD*ALYKTSTMKAARSGSELMKSASF 510
           KQY+   S+ +D  +    SYE +Y  K+    + D  L     M+ A+  +   K    
Sbjct: 476 KQYFLNTSNYMDATKDTEISYELLYTSKDSPYNMPD--LTVPEYMRLAKRIATCDKPEDP 533

Query: 511 HHYILQPIHSNN*ASEPERTKCPSLCSLLFVY 606
           H + LQ    N       + K PS+C + + Y
Sbjct: 534 HQFKLQSGDQN--TFRISKKKKPSICPIAYTY 563


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 18  KNFV-VSFLAKFRHFYWHCNPVYKVTKNI-DLINT*VQLSFLVVRYIGMNI 164
           K+F  ++F+  F HF++H + +++ T  +  LI   + + +L V + G  +
Sbjct: 385 KSFANLAFITIFSHFFYHIDDMWRSTLGLFSLIPQIIGIIYLTVMFTGREL 435


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 598 TVNYTMMDTWCVLALMLNYYCE 533
           TV+YT+ + + VL L++ Y CE
Sbjct: 330 TVSYTVCECYEVLGLLIRYLCE 351


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 286  NLESKRRQILQRSNFGKKMVLEI*NDLYN 200
            NL+S++R I+  +    +M+L + NDL N
Sbjct: 1815 NLDSEQRDIVSAARISCEMLLRVINDLLN 1843


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = -2

Query: 613 YKSTQTVNYTMMDTWCVLALMLNYYCELAVKYN 515
           Y+ T  ++ +++D+W  +A+++  +  L V+Y+
Sbjct: 229 YQYTNMLSASLLDSWATVAVVILSFIFLKVRYH 261


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 350  IPPLSIHFKFQIIATNQSIYLKNTTSIYKIELCIKHLL 463
            + P ++  +  II  +  +Y K   SIY +++C++ ++
Sbjct: 965  LKPTNLTIQRNIIEFDPPVYRKKEDSIYLLDMCLQSVV 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,947
Number of Sequences: 5004
Number of extensions: 59119
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)