Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00972
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14) 29 2.9
SB_2101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 29 3.8
SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_18501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_13116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17) 28 6.7
SB_42772| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 28 6.7
SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6) 28 6.7
SB_13202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_18360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 346 CHSSSIDTFQIPNNSYES--VYLLKEYYIYLQD*ALYKTSTMKAARSGSELMKSASFHHY 519
C + S+ T+Q+ N+ E +L YY+ L D LY+ S EL++ H +
Sbjct: 77 CMTRSVKTYQLKNHISEKNIAWLSMPYYVTLTDYLLYRHRDQDTRPSADELLR----HDF 132
Query: 520 ILQP 531
+ +P
Sbjct: 133 LQEP 136
>SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)
Length = 696
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F+++LPD AAFIV+++ K S
Sbjct: 191 ISIFLNALPDYAAFIVEIISKGIS 214
>SB_2101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 668 TSNTFY*VSMYIYKTHKYIQKYTNSKLHND 579
T+ + Y M + KTH ++ Y KLHND
Sbjct: 81 TTRSRYSRPMSLNKTHSHVMNYCKCKLHND 110
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F ++LPD AAFIV+++ K S
Sbjct: 683 ISIFFNALPDYAAFIVEIIIKGIS 706
>SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 342 IVLLNLQCVFKQNLV-GSKGI*SLNGDKFCKDQILEKKWF 226
I + L+CV QNL ++ I S N KFC + I +W+
Sbjct: 32 IAVAALECVQYQNLTQANRNIKSTNVGKFCDNTITAGQWY 71
>SB_18501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 518 IFYSQFTVIIEHQSQNAPSVHHCVVYCLCTFVYICVF-YKCTL 643
I+ ++T+ + ++ AP + C + +CT Y C Y CTL
Sbjct: 27 IYGGRYTLDVVYEITPAPLDYACTLDYVCTLDYACTLDYACTL 69
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F ++LPD AAFIV+++ K S
Sbjct: 544 ISIFFNALPDYAAFIVEIISKGIS 567
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F ++LPD AAFIV+++ K S
Sbjct: 1645 ISIFFNALPDYAAFIVEIISKGIS 1668
>SB_13116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F ++LPD AAFIV+++ K S
Sbjct: 35 ISIFFNALPDYAAFIVEIISKGIS 58
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 506 LALFISSLPDRAAFIVDVLYKAQS 435
+++F ++LPD AAFIV+++ K S
Sbjct: 507 ISIFFNALPDYAAFIVEIISKGIS 530
>SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17)
Length = 218
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 641 MYIYKTHKYIQKYTNSKLHND 579
M + KTH ++ Y KLHND
Sbjct: 112 MSLNKTHSHVMNYCKCKLHND 132
>SB_42772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 641 MYIYKTHKYIQKYTNSKLHND 579
M + KTH ++ Y KLHND
Sbjct: 3 MSLNKTHSHVMNYCKCKLHND 23
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 641 MYIYKTHKYIQKYTNSKLHND 579
M + KTH ++ Y KLHND
Sbjct: 136 MSLNKTHSHVMNYCKCKLHND 156
>SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6)
Length = 229
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 641 MYIYKTHKYIQKYTNSKLHND 579
M + KTH ++ Y KLHND
Sbjct: 127 MSLNKTHSHVMNYCKCKLHND 147
>SB_13202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 530 QFTVIIEHQSQNAPSVHHCVVYCL 601
Q TV + ++ N PS CV YCL
Sbjct: 302 QLTVHVFYEESNVPSPTQCVEYCL 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,118,786
Number of Sequences: 59808
Number of extensions: 396568
Number of successful extensions: 663
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -