Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00972
         (722 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    31   5.5  
AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 575 VHHCVVYCLCTFVYICV 625
           VH CV  CLC +V+ICV
Sbjct: 199 VHICVCVCLCVWVHICV 215



 Score = 30.7 bits (66), Expect = 5.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 575 VHHCVVYCLCTFVYICV 625
           VH CV  CLC +V+ICV
Sbjct: 237 VHICVCVCLCVWVHICV 253


>AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38312 fis, clone FCBBF3021506. ).
          Length = 134

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 584 CVVYCLCTFVYICVF 628
           CV  C+C +VY+CVF
Sbjct: 71  CVFVCVCMYVYLCVF 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,734,689
Number of Sequences: 237096
Number of extensions: 1752529
Number of successful extensions: 2683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)