Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00972
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical p...    30   1.9  
AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical ...    30   1.9  
U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family...    29   3.4  
U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +3

Query: 9   LISKNFVVSF--LAKFRHFYWHCNP 77
           L+S+ F+++F  L KF+++YW C P
Sbjct: 114 LLSQFFIIAFADLKKFKYYYWTCVP 138


>AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +3

Query: 9   LISKNFVVSF--LAKFRHFYWHCNP 77
           L+S+ F+++F  L KF+++YW C P
Sbjct: 114 LLSQFFIIAFADLKKFKYYYWTCVP 138


>U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family
           protein 1 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 331 KQYYYCHSSSIDTFQIPNNSYESVYLLKEYYIYLQD*ALYKTST 462
           + YY+  S S++   I NNS ++V  LK Y I + D  L+ T++
Sbjct: 218 EMYYHGESISVNV-HIQNNSNKTVKKLKIYIIQVADICLFTTAS 260


>U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C1.5a protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 235 FFQNLIFAEFVAV*TLDSLRSYKILFKNTL*VKQYYYCHS-SSID-TFQIPNNSYES 399
           F   LIF  F+A   +D +R Y+ LFK+ +   +   C++    D +F IP   ++S
Sbjct: 230 FIPQLIFNSFIAKNLVDMVRPYRELFKDMVDFDEVCRCNTVRGFDRSFVIPMYGFKS 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,448
Number of Sequences: 27780
Number of extensions: 326550
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)