Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00972
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    31   0.58 
At2g34315.1 68415.m04200 disease resistance protein-related simi...    28   7.2  

>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 448 YKTSTMKAARSGSELMKSASFHH-YILQPIHSNN*ASEPERTKCPSLC 588
           Y+ ST    R G E++ S +  H YI QP+   N A+ P+R    S+C
Sbjct: 217 YQKSTCVHLRGGDEVIFSLNGKHAYIFQPVKDENLAA-PDRASSLSIC 263


>At2g34315.1 68415.m04200 disease resistance protein-related similar
           to SP|P54120 AIG1 protein {Arabidopsis thaliana}
          Length = 246

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 530 QFTVIIEHQSQNAPSVHHCVVYCLCTFVYICVF 628
           +F VI+  Q  N   +  CV YC C F Y C+F
Sbjct: 212 RFGVIVS-QLLNHHLLLFCVFYCFC-FFYFCIF 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,638
Number of Sequences: 28952
Number of extensions: 272008
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)