Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00971
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 84 1e-16
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 84 1e-16
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 37 0.012
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 37 0.012
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 37 0.012
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 37 0.016
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.028
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.028
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 36 0.028
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 36 0.037
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 36 0.037
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 35 0.050
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 35 0.065
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 34 0.087
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 33 0.26
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 32 0.35
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 32 0.35
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 32 0.35
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 32 0.35
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 32 0.46
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 32 0.46
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.61
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 0.61
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 31 0.81
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 31 0.81
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 31 0.81
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 31 0.81
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 31 0.81
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 31 0.81
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 30 1.4
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 30 1.4
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 30 1.4
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 24 1.6
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 1.9
At5g12410.1 68418.m01459 THUMP domain-containing protein contain... 30 1.9
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 30 1.9
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.9
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 1.9
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 30 1.9
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 2.5
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 2.5
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 2.5
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 29 3.3
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 29 3.3
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 4.3
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 4.3
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 29 4.3
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 28 5.7
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 28 5.7
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 7.5
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 28 7.5
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 7.5
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 28 7.5
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 28 7.5
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 27 9.9
At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein si... 27 9.9
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 27 9.9
At5g25440.1 68418.m03021 protein kinase family protein contains ... 27 9.9
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 27 9.9
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 27 9.9
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 9.9
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof... 27 9.9
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 83.8 bits (198), Expect = 1e-16
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Frame = +3
Query: 75 MSGDALEAQLQVRFITKQEQ-YAVPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGN 251
+ G+ + +L V+F+TK + + VP + AI NVT G + E + +
Sbjct: 3 IDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEP- 61
Query: 252 IDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 428
DFL+ GEL+ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 429 SWILSGSYDNSLHIWSTKG 485
+IL+G YD +WS+ G
Sbjct: 122 RFILTGCYDGLGRVWSSAG 140
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTK 482
H W+SA + H SSW +LS SYD + +W +
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = +2
Query: 542 SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYR------GHDKGIECLSVSADGNR 703
S + T + S D+T L+ ++ P SVD R GH ++ +S GN
Sbjct: 161 SNDAETVTVATASKDRTLRLFKFD-PAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNM 219
Query: 704 FASGSW 721
S SW
Sbjct: 220 VCSSSW 225
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 83.8 bits (198), Expect = 1e-16
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Frame = +3
Query: 75 MSGDALEAQLQVRFITKQEQ-YAVPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGN 251
+ G+ + +L V+F+TK + + VP + AI NVT G + E + +
Sbjct: 3 IDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEP- 61
Query: 252 IDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 428
DFL+ GEL+ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 429 SWILSGSYDNSLHIWSTKG 485
+IL+G YD +WS+ G
Sbjct: 122 RFILTGCYDGLGRVWSSAG 140
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 393 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTKGQHKLAIPGIHH 518
H W+SA + H SSW +LS SYD + +W + L++ H+
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHN 401
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = +2
Query: 542 SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYR------GHDKGIECLSVSADGNR 703
S + T + S D+T L+ ++ P SVD R GH ++ +S GN
Sbjct: 161 SNDAETVTVATASKDRTLRLFKFD-PAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNM 219
Query: 704 FASGSW 721
S SW
Sbjct: 220 VCSSSW 225
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 539 VSFQGDQAT-FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
VS G F+SGS D TA LW +V T+ GH+ + + DG RF +G
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTG 266
Query: 716 S 718
S
Sbjct: 267 S 267
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 539 VSFQGDQAT-FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
VS G F+SGS D TA LW +V T+ GH+ + + DG RF +G
Sbjct: 148 VSISGSNPNWFISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTG 204
Query: 716 S 718
S
Sbjct: 205 S 205
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 518 PVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADG 697
PV ++++ S G + F + + T +W + +D + H I CL +SADG
Sbjct: 234 PVTSIAF-SVSG-RLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADG 291
Query: 698 NRFASGSW 721
+ +GSW
Sbjct: 292 SALCTGSW 299
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 539 VSFQGDQAT-FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
VS G F+SGS D TA LW +V T+ GH+ + + DG RF +G
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTG 266
Query: 716 S 718
S
Sbjct: 267 S 267
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 518 PVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADG 697
PV ++++ S G + F + + T +W + +D + H I CL +SADG
Sbjct: 296 PVTSIAF-SVSG-RLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADG 353
Query: 698 NRFASGSW 721
+ +GSW
Sbjct: 354 SALCTGSW 361
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 539 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
V+F F SGS D L +W++ + C+ TY+GH +G+ L + DG SG
Sbjct: 200 VNFHPFGEFFASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNVLRFTPDGRWIVSG 254
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 566 FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
F SGS D L +W++ + C+ TY+GH +G+ L + DG SG
Sbjct: 116 FASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNVLRFTPDGRWVVSG 161
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 566 FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
F SGS D L +W++ + C+ TY+GH +G+ L + DG SG
Sbjct: 116 FASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNVLRFTPDGRWVVSG 161
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 35.9 bits (79), Expect = 0.028
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSV----DCMITYRGHDKGIECLSVSA 691
KAVS+V F D T VS S D + LW N +S C +TY+GH + +S
Sbjct: 895 KAVSYVKFM-DSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSV 953
Query: 692 DGNRFASGS 718
A GS
Sbjct: 954 LDGYIACGS 962
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +2
Query: 527 AVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRF 706
A+S V F D S S D+T ILW + + Y GH GI L+ S+D +
Sbjct: 45 AISCVKFSNDGNLLASASVDKTMILW----SATNYSLIHRYEGHSSGISDLAWSSDSHYT 100
Query: 707 ASGS 718
S S
Sbjct: 101 CSAS 104
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 530 VSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFA 709
+S +++ D S S D T L +W+ R+ +C+ RGH + C++ + N
Sbjct: 88 ISDLAWSSDSHYTCSASDDCT--LRIWDA-RSPYECLKVLRGHTNFVFCVNFNPPSNLIV 144
Query: 710 SGSW 721
SGS+
Sbjct: 145 SGSF 148
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 351 LERFPAPTPQDCLM----HDDWVSAVQAH--SSWILSGSYDNSLHIWSTK 482
L + A +P +CL H ++V V + S+ I+SGS+D ++ IW K
Sbjct: 109 LRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVK 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 644 TYRGHDKGIECLSVSADGNRFASGS 718
T GH I C+ S DGN AS S
Sbjct: 38 TLEGHTAAISCVKFSNDGNLLASAS 62
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 539 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
V+F VSGS D+T + +W V C+ + H I + + DG+ S S
Sbjct: 134 VNFNPPSNLIVSGSFDET--IRIWEVKTGK--CVRMIKAHSMPISSVHFNRDGSLIVSAS 189
Query: 719 WG*QC 733
C
Sbjct: 190 HDGSC 194
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 533 SWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFAS 712
S V F SGS D A L +W++ + C+ TY+GH +GI + + DG S
Sbjct: 104 SAVEFHPFGEFLASGSSD--ANLKIWDIRKKG--CIQTYKGHSRGISTIRFTPDGRWVVS 159
Query: 713 G 715
G
Sbjct: 160 G 160
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 35.1 bits (77), Expect = 0.050
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +2
Query: 533 SWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFAS 712
S V F SGS D L VW+ + C+ TY+GH +GI + S DG S
Sbjct: 53 SAVEFHPFGEFLASGSSDTN--LRVWDTRKKG--CIQTYKGHTRGISTIEFSPDGRWVVS 108
Query: 713 G 715
G
Sbjct: 109 G 109
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 605 VWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGSW 721
+W+V NS CM TY GH K + + S DG++F + +
Sbjct: 309 IWDV-YNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGY 346
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 518 PVKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADG 697
P + WV + ++GS D + LW+WN + + M + GH+ + C + DG
Sbjct: 154 PGAGIEWVRWHPRGHIVLAGSEDCS--LWMWNADKEAYLNM--FSGHNLNVTCGDFTPDG 209
Query: 698 NRFASGS 718
+GS
Sbjct: 210 KLICTGS 216
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
D +G D A LW + D GH + CL+ S DG ASG
Sbjct: 82 DATLVATGGGDDKAFLW----KIGNGDWAAELPGHKDSVSCLAFSYDGQLLASG 131
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 545 FQGDQATFVSGSHDQTAILWVWNVPR-NSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
F D +GS D + I VWN S+ + + H +G+ CL ++++ + SGS
Sbjct: 205 FTPDGKLICTGSDDASLI--VWNPKTCESIHIVKGHPYHTEGLTCLDINSNSSLAISGS 261
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 32.7 bits (71), Expect = 0.26
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
+AV VSF D SGS D T LW + + T +GH + ++ S DG
Sbjct: 110 EAVLCVSFSPDGKQLASGSGDTTVRLW----DLYTETPLFTCKGHKNWVLTVAWSPDGKH 165
Query: 704 FASGS 718
SGS
Sbjct: 166 LVSGS 170
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 635 CMITYRGHDKGIECLSVSADGNRFASGS 718
C T GH + + C+S S DG + ASGS
Sbjct: 101 CSQTIAGHAEAVLCVSFSPDGKQLASGS 128
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
+ ++++ + + S + D T LW ++ + + TYRGH+ + C VS D +R
Sbjct: 11 RPLTFLRYNREGDLLFSCAKDHTPTLWF----ADNGERLGTYRGHNGAVWCCDVSRDSSR 66
Query: 704 FASGS 718
+GS
Sbjct: 67 LITGS 71
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
+ ++++ + + S + D T LW ++ + + TYRGH+ + C VS D +R
Sbjct: 11 RPLTFLRYNREGDLLFSCAKDHTPTLWF----ADNGERLGTYRGHNGAVWCCDVSRDSSR 66
Query: 704 FASGS 718
+GS
Sbjct: 67 LITGS 71
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
+ ++++ + + S + D T LW ++ + + TYRGH+ + C VS D +R
Sbjct: 11 RPLTFLRYNREGDLLFSCAKDHTPTLWF----ADNGERLGTYRGHNGAVWCCDVSRDSSR 66
Query: 704 FASGS 718
+GS
Sbjct: 67 LITGS 71
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 393 HDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKGQHKLAIPGIH 515
H+D+V+ +Q ++ LSGS D + IWS + +H + +H
Sbjct: 545 HNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLH 588
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
D SG D T ++W + R C+ GH+ + LS S +G+ ASGS
Sbjct: 552 DGRYMASGDEDGTIMMWDLSTAR----CITPLMGHNSCVWSLSYSGEGSLLASGS 602
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 572 SGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASG 715
+GS D+T LW + +C+ + GH + L++S DG ASG
Sbjct: 516 TGSSDKTVRLW----DVQTGECVRIFIGHRSMVLSLAMSPDGRYMASG 559
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 530 VSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFA 709
+S V+F D VS S D+T L +W+V S+ + T GH C++ + N
Sbjct: 74 ISDVAFSSDARFIVSASDDKT--LKLWDVETGSL--IKTLIGHTNYAFCVNFNPQSNMIV 129
Query: 710 SGSW 721
SGS+
Sbjct: 130 SGSF 133
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSV-DCMITYRGHDKGIECLSVSADGN 700
+AVS V F D S S D+T + N + + + + + GH+ GI ++ S+D
Sbjct: 25 RAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDAR 84
Query: 701 RFASGS 718
S S
Sbjct: 85 FIVSAS 90
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 539 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
V+F VSGS D+T + +W+V C+ H + + + DG+ S S
Sbjct: 119 VNFNPQSNMIVSGSFDET--VRIWDVTTGK--CLKVLPAHSDPVTAVDFNRDGSLIVSSS 174
Query: 719 WG*QC 733
+ C
Sbjct: 175 YDGLC 179
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
++V ++FQ D A S D A +W R+ ++ ++GH K + ++ S +G
Sbjct: 382 RSVYGIAFQQDGALAASCGLDSLARVWDLRTGRS----ILVFQGHIKPVFSVNFSPNGYH 437
Query: 704 FASGSWG*QC 733
ASG QC
Sbjct: 438 LASGGEDNQC 447
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 572 SGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSAD 694
SGS D+T + VW N C+ GH ++CL+V AD
Sbjct: 353 SGSADKT--ICVWKRDGNIHTCLSVLTGHTGPVKCLAVEAD 391
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
D TF S S D+T + +WN+ S D T H KG+ C+ G++
Sbjct: 154 DTNTFASASLDRT--IKIWNL--GSPDPNFTLDAHQKGVNCVDYFTGGDK 199
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
D TF S S D+T + +WN+ S D T H KG+ C+ G++
Sbjct: 154 DTNTFASASLDRT--IKIWNL--GSPDPNFTLDAHQKGVNCVDYFTGGDK 199
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
D TF S S D+T + +WN+ S D T H KG+ C+ G++
Sbjct: 154 DTNTFASASLDRT--IKIWNL--GSPDPNFTLDAHQKGVNCVDYFTGGDK 199
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 318 VSTEDTLEVEYLERFPAPTPQDCLMHDDWV---SAVQAHSSWILSGSYDNSLHIWSTKGQ 488
VS D V+Y + A D L H D+V + S +++GSYD+++ +W +
Sbjct: 152 VSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDARVH 211
Query: 489 HKLAIPGIHH 518
I I+H
Sbjct: 212 TSNWIAEINH 221
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 554 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
D TF S S D+T + +WN+ S D T H KG+ C+ G++
Sbjct: 154 DTNTFASASLDRT--IKIWNL--GSPDPNFTLDAHQKGVNCVDYFTGGDK 199
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 31.1 bits (67), Expect = 0.81
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 530 VSWVSFQGD--QATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
VS V F + Q T VS S D+T + VWN+ ++ T GH + ++VS DG+
Sbjct: 153 VSCVRFSPNTLQPTIVSASWDKT--VKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSL 208
Query: 704 FASG 715
ASG
Sbjct: 209 CASG 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 569 VSGSHDQTAILWVWNVPRNSVD-CMITYRGHDKGIECLSVSADGNRFASGSW 721
VS S D++ ILW + GH +E + +S+DG SGSW
Sbjct: 32 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 83
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 530 VSWVSFQGDQATFVSGSHDQTAILWVW 610
V+ VSF D +SGS D+ ILW W
Sbjct: 58 VNTVSFNADGDILLSGSDDRQVILWDW 84
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 393 HDDWVSAVQAHSSWILSGSYDNSLHIW 473
H D +S + H+ I SGS+D +L +W
Sbjct: 173 HADSISCLAVHAGIIYSGSWDKTLKVW 199
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 644 TYRGHDKGIECLSVSADGNRFASGS 718
TYRGH + C +S D +R +GS
Sbjct: 74 TYRGHSGAVWCCDISRDSSRLITGS 98
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILW 604
+A++ + D + F++GSHD+TA LW
Sbjct: 221 EAITSLCKAADDSHFLTGSHDKTAKLW 247
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 530 VSWVSFQGDQATFVSGSHDQTAILW 604
VS V+ D +GS+D T ++W
Sbjct: 1049 VSCVAVTADSTILATGSYDTTVMVW 1073
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 653 GHDKGIECLSVSADGNRFASGSWG*QCL 736
GHD I CL VS D + SGS C+
Sbjct: 1109 GHDDIITCLYVSTDLDIVISGSKDGTCV 1136
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 411 AVQAHSSWILSGSYDNSLHIWSTK 482
A + +I SGS D S+HIWS K
Sbjct: 548 AFSPNGEYIASGSLDKSIHIWSIK 571
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 557 QATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
Q T S S D T LW + + + ++ GH + + L+ S +G ASGS
Sbjct: 511 QLTLASASFDSTVKLWDAELGK----MLCSFNGHREPVYSLAFSPNGEYIASGS 560
>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
Pfam profile PF02926: THUMP domain
Length = 376
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 216 EGDLTIVREGGNIDFLVCGELLCASLAEHLQEKGVSTEDTLEVEYL 353
+GD +V EGGN D + E+ + + + EK +++E + EV+ L
Sbjct: 110 DGDKAVVSEGGN-DLVNEKEIASEGVNDQVNEKEIASEGSCEVKQL 154
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 530 VSWVSFQGDQATFVSGSHDQTAILWVWNV 616
V+ VSF + +SGS D+ +LW W +
Sbjct: 62 VNTVSFNAEGDVLISGSDDRRVVLWDWQL 90
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 527 AVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDC--MITYRGHDKGIECLSVSADGN 700
AV + F SGSHD+ LW R DC + +GH I L ++DG+
Sbjct: 55 AVYTMKFNPAGTLIASGSHDREIFLW-----RVHGDCKNFMVLKGHKNAILDLHWTSDGS 109
Query: 701 RFASGS 718
+ S S
Sbjct: 110 QIVSAS 115
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 387 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAI 503
L H D++ VQ H + WI+S S D ++ IW+ + + +++
Sbjct: 90 LGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISV 130
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 539 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLS 682
V F + VS S DQT +W W S C+ GH+ + C S
Sbjct: 99 VQFHHENPWIVSASDDQTIRIWNW----QSRTCISVLTGHNHYVMCAS 142
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRN-SVDCMITYRGHDKGIECLSVSADGN 700
+ V+W SF VSG+ D+ LW N + VD T RGH + + A +
Sbjct: 205 RGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWEVD---TLRGHMNNVSSVMFHAKQD 261
Query: 701 RFASGS 718
S S
Sbjct: 262 IIVSNS 267
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 527 AVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRF 706
AV+ ++ D + SGS D++ ++W N + RGHDK I LS+ +
Sbjct: 282 AVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAI--LSLFNVSDLL 339
Query: 707 ASGS 718
SGS
Sbjct: 340 LSGS 343
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
K V+ V F GD ++ S D+T +W N + C T H + ++V
Sbjct: 265 KKVTSVKFVGDSDLVLTASADKTVRIW-RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKY 323
Query: 704 FASGS 718
F S S
Sbjct: 324 FVSAS 328
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNR 703
K V+ V F GD ++ S D+T +W N + C T H + ++V
Sbjct: 265 KKVTSVKFVGDSDLVLTASADKTVRIW-RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKY 323
Query: 704 FASGS 718
F S S
Sbjct: 324 FVSAS 328
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 539 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLS 682
V F + VS S DQT +W W S C+ GH+ + C S
Sbjct: 99 VQFHHEYPWIVSASDDQTIRIWNW----QSRTCVSVLTGHNHYVMCAS 142
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 387 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWS 476
L H D++ VQ H WI+S S D ++ IW+
Sbjct: 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 524 KAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRN-SVDCMITYRGHDKGIECLSVSADGN 700
+ V+W +F VSG+ D+ LW N + VD T RGH + + A +
Sbjct: 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD---TLRGHMNNVSSVMFHAKQD 261
Query: 701 RFASGS 718
S S
Sbjct: 262 IIVSNS 267
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 387 LMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLA-IPGIH 515
L H DWV + H + + S S + ++IW + LA IP H
Sbjct: 293 LRHSDWVWGLAPHETTLASTS-GSDVYIWDVSSETPLAIIPDAH 335
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 569 VSGSHDQTAILWVWNVPRNSVD-CMITYRGHDKGIECLSVSADGNRFASGSW 721
V+ S D++ ILW S GH +E + +S+DG SGSW
Sbjct: 32 VTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 83
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +3
Query: 381 DCL---MHDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKG 485
DCL H+ +V++VQ + ++ +SGS D + IW+ G
Sbjct: 360 DCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +3
Query: 369 PTPQDCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTK 482
P P C + H V+++ SS WI SGS D S+ +W +
Sbjct: 410 PYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVE 453
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 635 CMITYRGHDKGIECLSVSADGNRFASGS 718
C + Y+GH + +S + G ASGS
Sbjct: 415 CYLEYKGHTGAVTSISTDSSGEWIASGS 442
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 521 VKAVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITY----RGHDKGIECLSVS 688
+ AV+ ++ D SG+ D++ ++W + + + ++ RGH K I CL+V+
Sbjct: 278 LSAVNALAISEDGKVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVA 337
Query: 689 AD 694
+D
Sbjct: 338 SD 339
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 542 SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSV 685
+ D+ VSGS D + I+W + + + +GHD + C+ +
Sbjct: 904 AISSDRGKIVSGSDDLSVIVW----DKQTTQLLEELKGHDSQVSCVKM 947
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 563 TFVSGSHDQTAILWVWNVPRNSVDCMI--TYRGHDKGIECLSVSADGNRFASG 715
T VS S D+T +W N +C + T GH + ++VS DG+ ASG
Sbjct: 165 TIVSASWDKTVKVW------NLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASG 211
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 569 VSGSHDQTAILWVWNVPRNSVD-CMITYRGHDKGIECLSVSADGNRFASGSW 721
V+ S D++ ILW S GH ++ + +S+DG SGSW
Sbjct: 32 VTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSSDGQFALSGSW 83
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 574 TNKCSLIALEGNP*YCFYW*CMPGMASLCC 485
+N C + G YCF W C P A+ CC
Sbjct: 385 SNTCCCLYKYGK--YCFGWGCCPLEAATCC 412
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 378 QDCLMHDDWVSAVQAHS-SWILSGSY 452
+D + DWVS V HS SW+LS ++
Sbjct: 82 RDGMQEKDWVSLVAVHSDSWLLSVAF 107
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 393 HDDWVSAVQAHSSWILSGSYDNSLHIW 473
HDD V++V S + +GS D ++ +W
Sbjct: 176 HDDAVNSVTTAESLVFTGSADGTVKVW 202
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 574 TNKCSLIALEGNP*YCFYW*CMPGMASLCC 485
+N C + G YCF W C P A+ CC
Sbjct: 384 SNTCCCLFEYGK--YCFAWGCCPLEAATCC 411
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -3
Query: 474 SIYVSYCHNFLIESNYCVPEQLTPNRRALNSPVELVQGTFPSIRPQACPLSIPLFLVSAL 295
S+Y S H+ +E++ C T + + V+ G + CP+ +F
Sbjct: 356 SVYDSGEHS--LETDSCADTNRTIKIHSKSPMVKKANGAKKKSKGHECPICFRVFKSGQA 413
Query: 294 RGRHKVTLHILRNQYYRLL 238
G HK + H + NQ +R L
Sbjct: 414 LGGHKRS-HFIGNQEHRTL 431
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 572 SGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
+G+ D + + W +N N + + GH + L V A NR SGS
Sbjct: 245 AGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGA--NRLYSGS 291
>At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 689
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 602 WVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGSWG 724
WV + +++ D T R + ECL+ S D R G G
Sbjct: 353 WVLKIGKDNPDIFFTDREGRRSFECLNWSIDKERVLHGRTG 393
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 426 SSWILSGSYDNSLHIWSTKGQHKLAIPGIH 515
SS+I SGS D+ ++IW+ K L + H
Sbjct: 455 SSFIASGSEDSQVYIWNLKNTKPLEVLSGH 484
>At5g25440.1 68418.m03021 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 313
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 260 EINITAFSN-DGEV-SFKIALIKVLRSAGCDVTLDSVRTIRN 141
E ++ SN G+V SF + L+K+L G D+T+ + R I+N
Sbjct: 216 EYILSGMSNMAGDVYSFGVILLKMLTGLGKDLTISAKREIKN 257
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 569 VSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSAD 694
+SGS D+ +W + S C+ GH ++CL+V +
Sbjct: 381 LSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCLAVEEE 422
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 569 VSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRFASGS 718
V+GSHD T W + M T H K + +++ N FAS S
Sbjct: 318 VTGSHDTTIKFWDLRYGKT----MSTLTHHKKSVRAMTLHPKENAFASAS 363
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 527 AVSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIECLSVSADGNRF 706
AVS +S + SGS D+T L VW + + C+ + + HD I ++ D F
Sbjct: 251 AVSCLSLNEELGLLYSGSWDKT--LKVWRL--SDSKCLESIQAHDDAINTVAAGFDDLLF 306
Query: 707 ASGSWG 724
+ G
Sbjct: 307 TGSADG 312
>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
profile: PF04283 protein of unknown function (DUF439)
Length = 1197
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 350 LGKVPCTNSTGLFNARRLGVSCSGTQ*LD 436
+GK N+ G RR G++CS +Q +D
Sbjct: 752 IGKKVFVNAAGFLRIRRSGLACSSSQFID 780
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,001
Number of Sequences: 28952
Number of extensions: 342000
Number of successful extensions: 1106
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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