Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00969
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 516 RLACKDYIYIVSRCSAVSIHRNR 584
           R +C+D  Y    C ++ IH  R
Sbjct: 286 RYSCRDCSYATKYCHSLKIHLRR 308


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 516 RLACKDYIYIVSRCSAVSIHRNR 584
           R +C+D  Y    C ++ IH  R
Sbjct: 44  RYSCRDCSYATKYCHSLKIHLRR 66


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 288 LTSDRLGTRPLNHVNE 335
           L S  +G  PLNH+NE
Sbjct: 33  LLSQIVGVFPLNHLNE 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,236
Number of Sequences: 336
Number of extensions: 3913
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)