Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00969
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)           31   1.3  
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)                     30   2.3  

>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
          Length = 474

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 292 VKWYPKFQTLHVVCVVRDHKNYQRTFFVQNNNKTH 188
           V W P +    + C +R   NY+++  + +N++TH
Sbjct: 389 VDWMPSYDLGSITCHLRPFNNYEKSVTLLSNSQTH 423


>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
          Length = 523

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 286 WYPKFQTLHVVCVVRDHKNYQRTFFVQNNNKTHENYPHIKDYNNNEV 146
           W  + + L   C   + K+ Q    V  N + +E++PHI D   NEV
Sbjct: 222 WRNEHKDLLEGCYSYEEKHKQVESIVNKNREKYEHHPHILDKAANEV 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,005,000
Number of Sequences: 59808
Number of extensions: 411686
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)