Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.010
UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Re...    34   4.6  
UniRef50_Q4PF98 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_A2RP88 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.7 bits (96), Expect = 0.010
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -1

Query: 186 SLATKISVSKSTHRHNPLSFSPDLLSGSRFRSG 88
           SL T    +++ HR  PLSFSPDLLSGSRFR+G
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTG 412


>UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 1174

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 261 LFRSFRSVNGVFRYLKHRSPFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGS-RFRSGG 85
           LFRS             R    +KP L ++ S  ++  R +  S SP+ LS S R  S  
Sbjct: 107 LFRSLDDDEDKLAGPAPRGRAQTKPILISRSSTMENAQRSSRSSASPNRLSLSPRSSSSN 166

Query: 84  TALTRTSVSNILQRG*SPVS 25
           TALTRT  +N   R   P+S
Sbjct: 167 TALTRTRSTNSSSRCSPPLS 186


>UniRef50_Q4PF98 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 858

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 210 RSP--FPSKPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSGGTALTRTSVSNILQRG* 37
           RSP   P  P +++KI  S ST  H P S   + +  +   +GGT +  +  S++  RG 
Sbjct: 199 RSPQKLPQAPRMSSKIQPSSSTTVHRPGSARDETILNNNNANGGTPIASSVASSL--RGS 256

Query: 36  SPVSSPTRS 10
           S  SS   S
Sbjct: 257 SRTSSAVAS 265


>UniRef50_A2RP88 Cluster: Putative uncharacterized protein; n=1;
           Salmonella enterica subsp. enterica serovar Typhi|Rep:
           Putative uncharacterized protein - Salmonella enterica
           subsp. enterica serovar Typhi
          Length = 155

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 647 SFLSI*NKHLVLCRMYNEYRFYLKVFWFQ*HSQYCNPIFSKYE 775
           S+LS  NK++ + R+YN Y  +L ++ F   + + N  F ++E
Sbjct: 13  SYLSKTNKNVDMYRLYNPYNSHLSIYSFDYDNYFYNKYFGRHE 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,378,415
Number of Sequences: 1657284
Number of extensions: 16493980
Number of successful extensions: 38261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38251
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)