Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00968
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 33 0.061
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 32 0.081
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 1.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 4.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.3
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 5.3
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 7.0
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 9.3
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 32.7 bits (71), Expect = 0.061
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 575 YSTSSCPSRRVVCSAIKLQLYPNESFLS---I*NKHLVLCRMYNEYRFYLKVFWFQ*HSQ 745
Y + P+R VC AI+L L+ + FL + V+C Y + + +FW + Q
Sbjct: 1795 YHAFTLPAREFVCKAIELNLFATDFFLGHLLLFFMLPVICIPYIDRWHSVLLFWLRPSRQ 1854
Query: 746 YCNPIFS 766
PIFS
Sbjct: 1855 IRPPIFS 1861
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 32.3 bits (70), Expect = 0.081
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Frame = -1
Query: 309 LDLXTEW*TVDDALSTLFRSFRSVNGVFRYLKHRSPFPSKPSLATKISVSKSTHRHNPL- 133
L T W V +A T F V V + H SP S+ SLA ISV ++ H + P
Sbjct: 4 LSACTSWRHVHNAGFTFITKFPFVRNVHKLSYHISPLSSRFSLA-DISVKENNHPNGPQL 62
Query: 132 --------SFSP-DLLSGSRFRSGGTALTRTSVSNILQRG*SPVSSPTRSV 7
S SP G RF T LT +V ++ + + PTR +
Sbjct: 63 RLQTHFFHSSSPMHATKGFRFPKSSTPLTLPAVLSVASFA-NLLQIPTRRI 112
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 273 ALSTLFRSFRSVNGVFRYLKHRSPFPSKPSLATKISVSKSTHRHNP 136
A STL S GV + FPS PS++ K+ S+ + + P
Sbjct: 609 ASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKKLP 654
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 760 YRITILTVLLKPENL-QIKSILIIHST*HKVFVSYREKR 647
Y++T +++L +NL ++K +L S+ K F SY+EKR
Sbjct: 144 YQLTNISILNSLDNLDKVKYLLHDSSSLTKAFDSYKEKR 182
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -1
Query: 198 PSKPSLATKISVSKSTHRHNPLSFS---PDLLSGSRFRSGGTALTRTSVSNILQRG*SPV 28
PS SL++ +V+ S H P S S P +S +R ++ +R SVSN+L
Sbjct: 478 PSSVSLSSLSNVNSSMP-HKPASQSNVGPVRISSNRRSRKFSSSSRVSVSNLLAGSPPSP 536
Query: 27 SSPTRS 10
SS T+S
Sbjct: 537 SSSTKS 542
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 746 IDCVIETRKPSNKIDT---HYTFDITQGVCFISRET 648
+DC+I P+ + D+ H+ FD+ + +SR+T
Sbjct: 1018 LDCLINELGPNLRSDSSTSHFAFDLAHQLLLLSRDT 1053
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 417 VRMRNTSEDPDGGVYIETHEE 479
+R+ N + DP+ G+YI THEE
Sbjct: 425 LRVLNAARDPNVGIYI-THEE 444
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 204 PFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGS 103
P PS S S+S NP SP LLSGS
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGS 506
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 605 PSCWDKRK*STSLVFKITLAAASFAKPGLTRAISTAS 495
PS + + +TS IT+ +++ KP LT ++STAS
Sbjct: 905 PSSSSRNEGTTSYSSNITVTSSTL-KPSLTSSVSTAS 940
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 345 ENPLDVVADKYVLDLXTEW*TVDDALSTLFRSFRS 241
E PL+ +AD D EW T+D T+ R F++
Sbjct: 173 ELPLESIADVKA-DSIAEWVTLDPVRRTIAREFKN 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,087
Number of Sequences: 5004
Number of extensions: 72080
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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