Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    34   0.15 
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    31   0.79 
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305...    29   3.2  
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484           29   4.2  
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264     29   5.5  
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212...    28   7.3  
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    28   9.7  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 261 LFRSFRSVNGVFRYLKHRSPFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGS-RFRSGG 85
           LFRS             R    +KP L ++ S  ++  R +  S SP+ LS S R  S  
Sbjct: 54  LFRSLDDDEDKLAGPAPRGRAQTKPILISRSSTMENAQRSSRSSASPNRLSLSPRSSSSN 113

Query: 84  TALTRTSVSNILQRG*SPVS 25
           TALTRT  +N   R   P+S
Sbjct: 114 TALTRTRSTNSSSRCSPPLS 133


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 207 SPFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSGGTALTRTSVSNIL-QRG*SP 31
           +PF   P   +  S      + N +S    LLSGS+F +  +A T TS SN+L     +P
Sbjct: 782 APFSFSPQFGST-SPFAGQGKSNSVSSQSTLLSGSQFSNSLSAQTSTSNSNLLSSEKVNP 840

Query: 30  VSSPT 16
            SSP+
Sbjct: 841 GSSPS 845


>05_06_0027 -
           25029725-25030017,25030097-25030211,25030347-25030504,
           25030582-25030682,25030846-25030994,25031089-25031239,
           25031329-25031482,25032249-25032321,25032446-25032676
          Length = 474

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 207 SPFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSG 88
           +P   KPS     + +K  H H    F P L+    FR+G
Sbjct: 95  TPTKGKPSSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAG 134


>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
          Length = 663

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 218 RYLKTPLTDRKDRNNVLRASSTVYHSVXRSSTYLSATTSRGFSCRP*N*FERFLLY 385
           R L TP  +R +  + +++ ST       SST + A T++  S  P     +FL+Y
Sbjct: 338 RMLMTPGVERHNWTDEIKSLSTSPDEAKESSTAVPAATAKSTSSAPQKASYKFLIY 393


>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
          Length = 336

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 28  HGALTSLEDVANTSPSKSSPTGSETRPT 111
           H   T L  +A T+  KS+PTG + +PT
Sbjct: 222 HPVPTQLNALAGTTRHKSAPTGDDDKPT 249


>11_06_0435 -
           23519908-23520054,23520398-23520514,23521152-23521263,
           23521491-23521540,23522001-23522129,23522289-23522375,
           23523635-23523679,23523817-23523887,23523925-23524005,
           23524547-23524602,23526489-23526595
          Length = 333

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +2

Query: 263 VLRASSTVYHSVXRSSTYLSATTSRGFSCRP*N*FERFLLYQE*KKIMLLTRKDAQYKRG 442
           V+    TVYH +  +S Y S+     F C   + FE   + +  + +  LT K+ Q + G
Sbjct: 66  VITHPMTVYHRIDGTSAYHSSEIKSMFCC---HLFEGVFILEMVESLKRLTTKECQIEVG 122

Query: 443 PGRGCLY 463
              G  Y
Sbjct: 123 SALGGPY 129


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 223 VPQAPVPIPVETVACDEDFGE*INS*TQPTEFL 125
           +P  P PIPV T A  +   E ++     TEFL
Sbjct: 202 IPTTPRPIPVNTTASSDGIEETVDELVHFTEFL 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,232,683
Number of Sequences: 37544
Number of extensions: 456518
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)