Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)                   29   5.6  
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)                    29   5.6  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     28   9.9  

>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 228 FRYLKHRSPFPSKPSLATKISVSKSTHRHNP-LSFSPDLLSGSRFRSGGTALTRTSVSNI 52
           +  L +R P  +  SL T++ +S + +RH+P LS  P   +     S   +L  T  S++
Sbjct: 515 YSQLVNRYPKTNSSSLVTRLPLSVTRYRHSPLLSLLPLFTARQPHLSARLSLPETYSSSL 574

Query: 51  LQRG*SPVSSPTRS 10
           + R   P+S  T S
Sbjct: 575 VTR--YPLSCQTAS 586



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 228 FRYLKHRSPFPSKPSLATKISVSKSTHRHNPL 133
           +  L +R P  +  SL T++S+S + +RH+PL
Sbjct: 479 YSQLVNRYPKINSSSLVTRLSLSVTRYRHSPL 510


>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -1

Query: 207  SPFPSKPSLATKIS--VSKSTHRHNP-LSFSPDLLSGSRFRSGGTALTRTSVSNILQRG* 37
            S  PS   +AT  S  +S S  +  P LS SP+L  G    S  ++L R  +++ ++   
Sbjct: 1027 SAAPSLTEVATNSSGQLSSSFPKGLPDLSASPNLPDGVTSLSSSSSLLRDILADAVRSSE 1086

Query: 36   SPVSSPTRS 10
            S +SSP RS
Sbjct: 1087 SSLSSPVRS 1095


>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
          Length = 745

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 341 TLLMWSLINTYSIX*PNGKQSTTP*ARYFDPSDPLTVFLGTSSTG 207
           T+  W+ +   +     G  STTP   ++DP+  +TV    SS G
Sbjct: 181 TVWQWTEVQQEAFDKVKGMVSTTPVLTFYDPNKAVTVSADASSYG 225


>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
          Length = 507

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 341 TLLMWSLINTYSIX*PNGKQSTTP*ARYFDPSDPLTVFLGTSSTG 207
           T+  W+ +   +     G  STTP   ++DP+  +TV    SS G
Sbjct: 181 TVWQWTEVQQEAFDKVKGMVSTTPVLTFYDPNKAVTVSADASSYG 225


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 204 PFPSKPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSGGT 82
           P P K    TK   S + H ++   ++   LSG+RFR   T
Sbjct: 14  PSPRKRKNDTKTITSSTAHAYSRAKWTGSELSGNRFRKSKT 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,684,330
Number of Sequences: 59808
Number of extensions: 542716
Number of successful extensions: 1209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)