Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113612-1|AAM29617.1|  278|Drosophila melanogaster RH61846p pro...    29   7.2  
AY060263-1|AAL25302.1|  278|Drosophila melanogaster GH09427p pro...    29   7.2  
AE013599-1751|AAF58350.2|  278|Drosophila melanogaster CG13335-P...    29   7.2  
AE013599-1750|AAF58351.2|  410|Drosophila melanogaster CG13335-P...    29   7.2  

>AY113612-1|AAM29617.1|  278|Drosophila melanogaster RH61846p
           protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 LGMYSTSSCPSRRVVCSAIKLQLYPNESFLSI 661
           L +    SC S +V+C + + Q  PN+S++S+
Sbjct: 217 LALQLIDSCISNKVICGSFEEQSCPNKSYVSL 248


>AY060263-1|AAL25302.1|  278|Drosophila melanogaster GH09427p
           protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 LGMYSTSSCPSRRVVCSAIKLQLYPNESFLSI 661
           L +    SC S +V+C + + Q  PN+S++S+
Sbjct: 217 LALQLIDSCISNKVICGSFEEQSCPNKSYVSL 248


>AE013599-1751|AAF58350.2|  278|Drosophila melanogaster CG13335-PB,
           isoform B protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 LGMYSTSSCPSRRVVCSAIKLQLYPNESFLSI 661
           L +    SC S +V+C + + Q  PN+S++S+
Sbjct: 217 LALQLIDSCISNKVICGSFEEQSCPNKSYVSL 248


>AE013599-1750|AAF58351.2|  410|Drosophila melanogaster CG13335-PA,
           isoform A protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 LGMYSTSSCPSRRVVCSAIKLQLYPNESFLSI 661
           L +    SC S +V+C + + Q  PN+S++S+
Sbjct: 349 LALQLIDSCISNKVICGSFEEQSCPNKSYVSL 380


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,650,025
Number of Sequences: 53049
Number of extensions: 778835
Number of successful extensions: 1942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)