Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical p...    28   6.6  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    28   8.7  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical
           protein F20E11.2 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 519 NTCHINSFYIAKYLLHVSLYKHPRPGPRLYCASLRVSNIIFFYSWYKRNLSN 364
           NT  +  F     + H    K  +   R    SL+VS I+F +SWY   L+N
Sbjct: 176 NTITLFLFVFLMIVFHFK-GKRQKSDTRKLMKSLKVSTIVFIFSWYMCMLAN 226


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 519 NTCHINSFYIAKYLLHVSLYKHPRPGPRLYCASLRVSNIIFFYSWYKRNLSN 364
           NT  +  F     + H    K  +   R    SL+VS I+F +SWY   L+N
Sbjct: 176 NTITLFLFVFLMIVFHFK-GKKQKSDTRKLMKSLKVSVIVFIFSWYMCMLAN 226


>U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical
           protein C32B5.5 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 701 THYTFDITQGVCFISRETTRSDTIVILL--QSRRPSCWDKRK*STS 570
           T+YTFD T+G  F+  E +R     +L    SRR +    +K STS
Sbjct: 243 TYYTFDTTRGAVFVVMERSRKRYKAMLEDGSSRRSNQLTIKKNSTS 288


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 192 KPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSGGTALTRTSVSNILQRG*SPVSSPTR 13
           KPS ++  S + ++H  NP+  +  L + S      T  T T+VS     G S V++P  
Sbjct: 641 KPSTSSGPSTTTASHPVNPIGIANPLSAASAAAGFHTTKTSTAVSGNGNPG-SNVATPVL 699

Query: 12  SV 7
           S+
Sbjct: 700 SI 701


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
           protein H20J18.1a protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 192 KPSLATKISVSKSTHRHNPLSFSPDLLSGSRFRSGGTALTRTSVSNILQRG*SPVSSPTR 13
           KPS ++  S + ++H  NP+  +  L + S      T  T T+VS     G S V++P  
Sbjct: 686 KPSTSSGPSTTTASHPVNPIGIANPLSAASAAAGFHTTKTSTAVSGNGNPG-SNVATPVL 744

Query: 12  SV 7
           S+
Sbjct: 745 SI 746


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,206,900
Number of Sequences: 27780
Number of extensions: 395812
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)