Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00968
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07780.3 68414.m00842 phosphoribosylanthranilate isomerase 1 ...    31   0.87 
At1g07780.2 68414.m00841 phosphoribosylanthranilate isomerase 1 ...    31   0.87 
At1g07780.1 68414.m00840 phosphoribosylanthranilate isomerase 1 ...    31   0.87 
At5g05590.1 68418.m00607 phosphoribosylanthranilate isomerase 2 ...    31   1.1  
At1g29410.2 68414.m03599 phosphoribosylanthranilate isomerase, p...    31   1.1  
At1g29410.1 68414.m03598 phosphoribosylanthranilate isomerase, p...    31   1.1  
At3g14740.2 68416.m01864 PHD finger family protein similar to zi...    30   2.0  
At3g14740.1 68416.m01863 PHD finger family protein similar to zi...    29   3.5  
At1g29395.1 68414.m03595 stress-responsive protein, putative sim...    28   6.1  
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote...    28   8.1  
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote...    28   8.1  

>At1g07780.3 68414.m00842 phosphoribosylanthranilate isomerase 1
           (PAI1) identical to gi:619751
          Length = 225

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G  + AA + +++ R V+Y L + Q+G+LL
Sbjct: 123 GVFVEDDENTILRAADSSDLELVQLHGNGSRAAFSRLVRKRRVIYVLNANQDGKLL 178


>At1g07780.2 68414.m00841 phosphoribosylanthranilate isomerase 1
           (PAI1) identical to gi:619751
          Length = 275

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G  + AA + +++ R V+Y L + Q+G+LL
Sbjct: 123 GVFVEDDENTILRAADSSDLELVQLHGNGSRAAFSRLVRKRRVIYVLNANQDGKLL 178


>At1g07780.1 68414.m00840 phosphoribosylanthranilate isomerase 1
           (PAI1) identical to gi:619751
          Length = 275

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G  + AA + +++ R V+Y L + Q+G+LL
Sbjct: 123 GVFVEDDENTILRAADSSDLELVQLHGNGSRAAFSRLVRKRRVIYVLNANQDGKLL 178


>At5g05590.1 68418.m00607 phosphoribosylanthranilate isomerase 2
           (PAI2) identical to gi:619747
          Length = 275

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G  + AA + +++ R V+Y L + Q+G+LL
Sbjct: 123 GVFVEDDDNTILRAADSSDLELVQLHGNGSRAAFSRLVRKRRVIYVLNANQDGKLL 178


>At1g29410.2 68414.m03599 phosphoribosylanthranilate isomerase,
           putative strong similarity to GI:619749 from
           [Arabidopsis thaliana] (Plant Cell 7 (4), 447-461
           (1995))
          Length = 244

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G ++ AA + +++ R V+Y L + ++G+LL
Sbjct: 123 GVFVEDDENTILRAADSSDLELVQLHGNSSRAAFSRLVRERKVIYVLNANEDGKLL 178


>At1g29410.1 68414.m03598 phosphoribosylanthranilate isomerase,
           putative strong similarity to GI:619749 from
           [Arabidopsis thaliana] (Plant Cell 7 (4), 447-461
           (1995))
          Length = 213

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +1

Query: 451 GVFI*RHMKKILRYIEAVDMARVR-PGFANDAAANVILKTRDVLYFLLSQQEGRLL 615
           GVF+      ILR  ++ D+  V+  G ++ AA + +++ R V+Y L + ++G+LL
Sbjct: 123 GVFVEDDENTILRAADSSDLELVQLHGNSSRAAFSRLVRERKVIYVLNANEDGKLL 178


>At3g14740.2 68416.m01864 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 343

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 740 CVIETRKPSNKIDTHYTFDITQGVCFISRETTRSDTIVILLQSRRPSCWDKRK 582
           CVIE  +   K+  H T  + + +C   RE  +S  IV+   +     W++++
Sbjct: 276 CVIECSEMRCKLAFHVTCGLKEDLCIEYREGKKSGGIVVGFCNEHTKLWERQQ 328


>At3g14740.1 68416.m01863 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 341

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 740 CVIETRKPSNKIDTHYTFDITQGVCFISRETTRSDTIVILLQSRRPSCWDK 588
           CVIE  +   K+  H T  + + +C   RE  +S  IV+   +     W++
Sbjct: 276 CVIECSEMRCKLAFHVTCGLKEDLCIEYREGKKSGGIVVGFCNEHTKLWER 326


>At1g29395.1 68414.m03595 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505
          Length = 225

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 219 LKHRSPFPSKPSLATKISVSKSTHRH-NPLSFSPDLLSGSRFRSGGTALTRTSVSNILQR 43
           L H+ PF S   L ++ S      RH +P+ F+P  LSG R R   TA   T V    +R
Sbjct: 14  LHHQKPFLSL-KLRSRPSDLSGLGRHTSPVCFNPLRLSGDRQR---TATVSTRVEKRRKR 69

Query: 42  G*SPV 28
           G S V
Sbjct: 70  GSSVV 74


>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 58  ANTSPSKSSPTGSETRPTEKIRRET 132
           A TS S + P+GS+++P E ++ +T
Sbjct: 427 AETSSSGARPSGSDSKPAEAVKEKT 451


>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 58  ANTSPSKSSPTGSETRPTEKIRRET 132
           A TS S + P+GS+++P E ++ +T
Sbjct: 427 AETSSSGARPSGSDSKPAEAVKEKT 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,197
Number of Sequences: 28952
Number of extensions: 370029
Number of successful extensions: 897
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)