Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00966
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.0  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   4.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 55  SSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
           ++ + SS+ +E++    +T   EED  S  S       D SRD
Sbjct: 90  NNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEVKDSSRD 132


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 397  PSFTRGPKDGSFSTEKRKPSYTT 465
            P  T G   G+ STE   P +TT
Sbjct: 1015 PQVTTGVDTGASSTEHMHPDWTT 1037


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 288 DFDLRRHVESAGHQVELCPYVSVTSSSCRGYL 383
           ++ LR H  S   Q   C Y  V  S    ++
Sbjct: 247 EYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHM 278



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 52  ESSGLFSSSIEELQVRNSRTESTEEDKRSDD 144
           E SGLFSS   E  V     +S  + +  D+
Sbjct: 155 EKSGLFSSKTSEHSVDELSGKSDNDAEEYDE 185


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 288 DFDLRRHVESAGHQVELCPYVSVTSSSCRGYL 383
           ++ LR H  S   Q   C Y  V  S    ++
Sbjct: 5   EYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHM 36


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 265 GTCPSTGKTSIC 300
           GTC   GKT +C
Sbjct: 157 GTCQDLGKTFMC 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,574
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)