Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00966
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 33 0.050
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.088
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.12
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.15
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 29 0.47
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.62
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.62
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.1
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 28 1.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 1.9
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 27 2.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 4.4
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 26 4.4
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 4.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 7.7
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 7.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.7
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 7.7
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 32.7 bits (71), Expect = 0.050
Identities = 31/113 (27%), Positives = 51/113 (45%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
SS DS + S +SS SSS E ++ + S+ D S+ S S +S S D
Sbjct: 147 SSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSD 206
Query: 184 NILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSA 342
+ S S++ + SES+S S S+ + ++SS + S+S+
Sbjct: 207 SE-SESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSS 258
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.9 bits (69), Expect = 0.088
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = +1
Query: 49 DESSGLFSSSIEELQVRNSRTESTEE----DKRSDDSRPLSHASDFS--RDNILSLSNAP 210
D +GL + E ++ + R E + + + +DS SH DF RD++ S S +P
Sbjct: 18 DNLAGLSLTDEEVRRILSPRKEGSRQLPSSTSKDEDSEEASHKYDFEIDRDSLKSDSGSP 77
Query: 211 RRSRRGIAPYSES--QSP 258
R + AP S + QSP
Sbjct: 78 RLHQNATAPTSSTPLQSP 95
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.5 bits (68), Expect = 0.12
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Frame = +1
Query: 124 EDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICG 303
+ RS+ S L + S + + + N S G++ ++ + P TG +SI
Sbjct: 61 DSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAMNFNEGP-TGISSIAS 119
Query: 304 DTSSLLATK----SNSAPT*A*LRVRAAGIYINWAPSFTRGPKDGSFSTEKRKPSYTTGT 471
+S + +K SN + T + R R + + ++ PSF GP+ S S+ K+ S +
Sbjct: 120 KNNSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLS-SLSL 178
Query: 472 RVRRNPGAVH-ISSD 513
NP + +SSD
Sbjct: 179 HTHFNPSSSSTVSSD 193
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.15
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
SS SF S +SS FSS++ +S T ++ S + SH+S S
Sbjct: 348 SSPSSSSFSSTTS-SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
Query: 184 NILS---LSNAPRRS---RRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNS 339
S S+AP S + S S S S + K + +SSLL + S++
Sbjct: 407 KSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHT 464
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 82 EELQVRNSRTESTEEDKRSDDSRPLSHASD 171
EELQ+R ++ ++ E DK D++ LS+ D
Sbjct: 242 EELQIRKNKLDNEEWDKAFSDAKKLSNMKD 271
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.62
Identities = 30/115 (26%), Positives = 49/115 (42%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
+S SFI S+ SS SSS L +S T T S S SHA S
Sbjct: 72 TSPASSSFI--TSLVSSSSQQSSSSSASLTSSSSAT-LTSSSSASPTSSSSSHALSSSSS 128
Query: 184 NILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT 348
++++ S++ S ++ S S S S+ TS ++S++++ P+
Sbjct: 129 SLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPS 183
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.62
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
SS S + S SS SSS +S + S+ S SH+S S
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS 225
Query: 184 NILSLSNAPRRSRRGIAPYSESQSPSRGT-CPSTGKTSICGDTSSLLATKSNSA 342
+ S S+ P S I S S S T PS+ +S + S A + +A
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNA 279
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 351 SVTSSSCRGYLHKLGAKFHTWSKRWFVFDRETKTFVYYW--DKSEK 482
++ ++ C G++ K ++ W R+FV + T+ Y+ D SEK
Sbjct: 695 AIKTADCHGWMRKRSDRYGVWKSRYFVL-KGTRLSYYHSLNDASEK 739
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 183 QYFVA*QRATPQPTRHRTLQRVTEPLTRYLPVDREDFDLRRHVESA--GHQVELCP 344
Q++V +P H ++ ++T YL D FDL H E A GHQV P
Sbjct: 727 QFYVGDSGLLVKPVTHPSIDKITI----YLADDEVYFDLHDHTEYAGKGHQVVPAP 778
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = +1
Query: 70 SSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSES 249
S S E TES E+ + SD+S S + S + S + R G P S
Sbjct: 81 SESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSG--PSSFL 138
Query: 250 QSPSRGTCPSTGKTSICGDTS 312
+ P + G + G++S
Sbjct: 139 KKPEKEEAKPAGLKFLRGESS 159
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 49 DESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSH 162
DESS L+ SS +++V SR + R++ + L+H
Sbjct: 246 DESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTH 283
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.3
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
SS ++ I ESS SSS E + + + E+ + S DS S +S+ +
Sbjct: 119 SSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESE 178
Query: 184 NILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTG-KTSICGDTSSLLATKSNSA 342
+ S S E S S S+ +S GD+ S ++S S+
Sbjct: 179 SSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESS 232
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 223 RGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSA 342
R P ++S+SPS P++G+TS G + T S SA
Sbjct: 501 RSFVP-NKSKSPSGTKSPASGETSEAGVKETETTTSSESA 539
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 49 DESSGLFSSSIEELQVRNSRTESTEE-DKRSDDSRPLSHASDFSRDNILSLSNAPRRSRR 225
D+ +S I+ +S+ S E D+R D L + S N +SN ++
Sbjct: 432 DKKESNVTSKIKSTAENSSKPLSMNEADERKDGLNNLLFENK-SGANTKEMSNGTETAKE 490
Query: 226 GIAPYSESQSPSRG 267
+P +S SP+ G
Sbjct: 491 NCSPQQDSTSPTSG 504
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 297 LRRHVESAGHQVELCPYVSVTSSSCRGYLHKLGAKFHTWSKRWFV 431
L +H SA Q L + +G +H L H WSK W V
Sbjct: 202 LNKHRHSASLQ-NLYKLLDENKVLMQGTIHWLHGNLHRWSKCWAV 245
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 251 RAPHAVPARRQGRLRSAETRRVCW 322
R P VPA + RS E ++ CW
Sbjct: 373 REPEGVPAEEVYKCRSCEFQKECW 396
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 11 SWTTASSETVPSSTRVRACSHRRLKSCKSE-ILAPNQLRKTNAAMTVV 151
S T+SS T+PSSTR + S S S+ + L ++N TVV
Sbjct: 991 SGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTVV 1038
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 5 PASWTTASSETVPSSTRVRACSHRRLKSCKSEILAPNQLRKTNAA 139
P + A ET PS V H RL+SC S I A +LR + A
Sbjct: 35 PTFFWFAHDET-PSFKWVLNAYHERLRSCTSCIQAYYELRNESLA 78
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 368 VPRVFT*TGRQVSHVVQKMVRFRQRNENLRILLGQE 475
VPR+ +G VS V +K+ +R EN++++LG++
Sbjct: 316 VPRIIRSSGN-VS-VSEKLEELNKRYENMKVILGRD 349
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +1
Query: 67 FSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD------NILSLSNAPRRSRRG 228
FS+ + R++ T S E RSD S+ + SDF + N+ SN+ +S
Sbjct: 468 FSTDLPPTFERSNSTFSHPEPTRSDFSQAFTPVSDFPANLFPGSRNLFPTSNSGNQSTSS 527
Query: 229 IAPYSE 246
+ Y++
Sbjct: 528 FSRYNQ 533
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
S + D + +G ++ + G+ S+ ++ L+ R + K DS+ L + D +RD
Sbjct: 196 SFIRDAAALG--AIREVDLGIISTDVDNLKNGRKRQKKRARMKEKLDSKALRTSEDAARD 253
Query: 184 NIL 192
+
Sbjct: 254 EFI 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,128
Number of Sequences: 5004
Number of extensions: 54017
Number of successful extensions: 209
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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