Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00966
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16) 92 4e-19
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027) 39 0.003
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11) 36 0.023
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12) 34 0.093
SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9) 34 0.093
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14) 34 0.12
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8) 33 0.21
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8) 33 0.21
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 32 0.37
SB_15781| Best HMM Match : TP2 (HMM E-Value=1.7) 30 1.5
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2) 30 1.5
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9) 30 2.0
SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 29 2.6
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 29 2.6
SB_18106| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 29 2.6
SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 29 3.5
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 29 3.5
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 4.6
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 29 4.6
SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 28 6.1
SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9) 28 6.1
SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08) 28 6.1
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05) 28 8.0
SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_7479| Best HMM Match : Vinculin (HMM E-Value=0) 28 8.0
>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
Length = 453
Score = 91.9 bits (218), Expect = 4e-19
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +3
Query: 282 REDFDLRRHVESAGHQVELCPYVSVTSSSCRGYLHKLGAKFH-TWSKRWFVFDRETKTFV 458
++D +L +H+ S GH +E CP V VT + C+GYL K+G K TW KRWFVFDR+ K +
Sbjct: 318 KDDMNLAQHIVSVGHILENCPSVKVTPTLCKGYLTKMGGKIRKTWKKRWFVFDRQRKALL 377
Query: 459 YYWDKSEKKPRGGAYFQ 509
Y+ D+ +K P+G YFQ
Sbjct: 378 YFHDEHKKDPKGIIYFQ 394
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +2
Query: 479 EETQGRCIFPVIEEVYLDHGNTSKSPNPQTTFIVKTRQRRYYLMAPSGEAARIWIDVLFT 658
++ +G F IE+VY ++K P+P+TTF VKT Q+ Y++ APSG A IWIDV+ T
Sbjct: 385 KDPKGIIYFQAIEDVYAASWCSNKGPSPRTTFCVKTPQKSYFIAAPSGLAMSIWIDVILT 444
Query: 659 GAQG 670
G +G
Sbjct: 445 GREG 448
>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
Length = 369
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDRETKTFVYY 464
GYLHK G F W RWFV D + YY
Sbjct: 214 GYLHKRGHLFKQWKSRWFVLDTQRNQLRYY 243
>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
Length = 591
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 348 VSVTSSSCRGYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKPRGGAYFQ 509
+S SS + YL+ + W KRWFV D K Y+ + + P+G +Q
Sbjct: 481 ISEKYSSLQDYLNSTEVR-KNWKKRWFVLDFTKKYLAYFETEKTQHPKGAISYQ 533
>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
Length = 734
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 309 VESAGHQVELCPYVSVTSSSCRGYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKP 488
+E H V + P +S+ C GYL K G K +W +R+ V + YY D +
Sbjct: 631 LEGNVHNVSI-PALSIRHPDCHGYLSKQGHKVKSWKRRYCVL--KNGYLYYYSDMANNTA 687
Query: 489 RGGA 500
G A
Sbjct: 688 LGVA 691
>SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 241
Score = 34.3 bits (75), Expect = 0.093
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = +1
Query: 175 SRDNILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTG--KTSICGDTSSLLATKSNSAPT 348
S ++ LS++P SRR S +SPS+ C +TG TS G T+ ++ S P
Sbjct: 56 SASSVSCLSSSPFISRRRTNSESLQRSPSQSACLATGLRYTSAKGSTAQHRVFRTYSCPL 115
Query: 349 *A*LRVRAAGIYINWAPSFTRGPKDGS-FSTEKRKPSY--TTGTRVRR 483
+ Y ++ F R + G+ FS+ +R PS T R+ R
Sbjct: 116 FVEGKSSTNSKYEEFSYYFKRKLRPGTPFSSTERYPSIHSTVSPRIAR 163
>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
Length = 1030
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKPRGGAY 503
GYL KLG + W KRWFV ++ K +YY+ P+ Y
Sbjct: 643 GYLTKLGGRIKNWKKRWFVL-QDGK--LYYFKTPVATPKRTYY 682
>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
Length = 560
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 31 GNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAP 210
G+ S+ +SG S S EL R +ES +D L+ + SRD+ S+S+A
Sbjct: 494 GDSSLETSASGAKSQSARELYSRGI-SESLSSTDFEEDLESLASTNLRSRDDSESISSAD 552
Query: 211 RRSR 222
RRSR
Sbjct: 553 RRSR 556
>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
Length = 688
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 31 GNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAP 210
G+ S+ +SG S S EL R +ES +D L+ + SRD+ S+S+A
Sbjct: 538 GDSSLETSASGAKSQSARELYSRGI-SESLSSTDFEEDLESLASTNLRSRDDSESISSAD 596
Query: 211 RRSR 222
RRSR
Sbjct: 597 RRSR 600
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 32.3 bits (70), Expect = 0.37
Identities = 29/86 (33%), Positives = 41/86 (47%)
Frame = +1
Query: 82 EELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPS 261
EE++ R SRT S+ S SR S S+ SR S S + RSR S+S+S S
Sbjct: 4 EEVKPR-SRTSSSSSSNHSRRSR--SRGSNGSRGKAQSPSGSRSRSRSRSRSQSQSRSRS 60
Query: 262 RGTCPSTGKTSICGDTSSLLATKSNS 339
R S ++ +SS ++S S
Sbjct: 61 RSRSRSRSRSRSRSRSSSRSRSRSRS 86
>SB_15781| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 494
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +1
Query: 22 SFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLS 201
S I +CS E+S S + + +S E T+ +R + FS + +
Sbjct: 80 STITDCSRSSETSR--SDNRRSSKETHSPNEDTKSQERKVGKERKMEEAHFSISPRIRYT 137
Query: 202 NAPRRSRRGIAPYSESQSPSRGTCPS 279
+AP ++ G +P+S +++P + + P+
Sbjct: 138 SAPESTKLGESPFSLAKTPRKTSAPT 163
>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
Length = 610
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 251 RAPHAVPARRQGRLRSAETRRVCWPPSRTLPLRERDFEFVPRVFT*TGR-QVSH 409
RA H P R RLRSA P R +P R R E V TG+ Q SH
Sbjct: 421 RAKHYTPTRSHKRLRSASLDET--KPIRVMPRRTRKEELQEAVRRGTGQYQTSH 472
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 STEEDKRSDDSRPLSHASDFSRDNILSL--SNAPRRSRRGIAPYSESQSPSRG 267
S E+ + D P+S + + ++ +NA R R GI+P+ PSRG
Sbjct: 474 SAEQKSKESDLPPVSPKTQLRVNTVVPTPPTNASRLGRSGISPWRRVTPPSRG 526
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/105 (27%), Positives = 41/105 (39%)
Frame = +1
Query: 4 SSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRD 183
S+ +S + S SSG SSS NS + S+ S +S S +S S
Sbjct: 131 SNSNSNSSSSSSSSSSSSSGSSSSSNSN---SNSNSNSSSSSNSSSNSNSNSSSSSNSSS 187
Query: 184 NILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSL 318
N S SN+ S S S S S+ +S +SS+
Sbjct: 188 NSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSSSSRSSSSSSV 232
>SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9)
Length = 535
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 100 NSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSRG 267
N ES EDKR+D S P R + + + PR S RG AP E +G
Sbjct: 316 NIEQESVFEDKRADSSTP--DVKRTKRRSSCAAQHRPRGSDRGEAPGVEYAKVQKG 369
>SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 490
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 216 QPTRHRTLQRVTEPLTRYLPVDREDFDLRRHVE 314
+P+ R +RV + RY+ D ++FD+ RHV+
Sbjct: 107 EPSYARMKKRVVKKYGRYVWQDEDEFDISRHVK 139
>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 535
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 216 QPTRHRTLQRVTEPLTRYLPVDREDFDLRRHVE 314
+P+ R +RV + RY+ D ++FD+ RHV+
Sbjct: 107 EPSYARMKKRVVKKYGRYVWQDEDEFDISRHVK 139
>SB_18106| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 193
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 FSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSE 246
FSSS+ L R T T R D RP + + S D + SNA +R + +
Sbjct: 20 FSSSLT-LYSRGQTTSKTANATRLLDKRPSARVTTGSSDQAIEKSNAKQRDLKQ-QEKGD 77
Query: 247 SQSPSR-GTCPST 282
S++P R TC T
Sbjct: 78 SRTPRRYVTCLKT 90
>SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 394 APSFTRGPKDGSFSTEKRKPSYTTGTRVRRNPGAVHISSDRRSV 525
A S R P ++EKR+P+ T T +R P +S++R +
Sbjct: 72 ATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKRQL 115
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 394 APSFTRGPKDGSFSTEKRKPSYTTGTRVRRNPGAVHISSDRR 519
A S R P ++EKR+P+ T T +R P +S++R
Sbjct: 36 ATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 77
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 394 APSFTRGPKDGSFSTEKRKPSYTTGTRVRRNPGAVHISSDRR 519
A S R P ++EKR+P+ T T +R P +S++R
Sbjct: 48 ATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 89
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 394 APSFTRGPKDGSFSTEKRKPSYTTGTRVRRNPGAVHISSDRR 519
A S R P ++EKR+P+ T T +R P +S++R
Sbjct: 60 ATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 101
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 79 IEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQ 252
+EE +S E ++ D +DD+ S+ SD D+ + P S+ + P ++ +
Sbjct: 588 LEERSDESSMDEDSDADSSADDASDESNESDIEVDDKSKETEKPSTSKASVPPAADRE 645
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 348 VSVTSSSCRGYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKS-EKKPRG 494
+S +S+ GYL+K G + +RWFV +YY+++ +K P G
Sbjct: 285 ISNSSTDKEGYLNKKGELNRGYQRRWFVL---KGNLLYYFERRLDKDPIG 331
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 103 SRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSRGTCPST 282
SR+ S +DK D + + S D S S + RSR S+S SR P
Sbjct: 182 SRSRSNSKDKAQDTEKDRKSSRSPSTDKRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKK 241
Query: 283 GKTS 294
+++
Sbjct: 242 SRSA 245
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 28.7 bits (61), Expect = 4.6
Identities = 33/138 (23%), Positives = 55/138 (39%)
Frame = +1
Query: 112 ESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKT 291
+ E+D R + R +S S + +S N+P++ R +P +S + + P T
Sbjct: 80 DEDEDDAREANKRSISPVRRKSYECQISGKNSPQKRSRSASPRLSERSATISSEPVHEGT 139
Query: 292 SICGDTSSLLATKSNSAPT*A*LRVRAAGIYINWAPSFTRGPKDGSFSTEKRKPSYTTGT 471
+TS + K P ++ A I ++ S + P G S K +
Sbjct: 140 K---ETSDVGDRKEKETPQEGSVKSTPADIVVH--ESSPKPPNTGIRSHNKSPLRSPKAS 194
Query: 472 RVRRNPGAVHISSDRRSV 525
R PG I + RRSV
Sbjct: 195 RALLEPGRSSIET-RRSV 211
>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 196 LSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSN 336
L N+ SR IAPY SQS ++G S ++SL++ N
Sbjct: 285 LKNSISSSRNSIAPYPYSQSGTKGYQSSQSGVRKSASSNSLVSLSGN 331
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 97 RNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSRGTCP 276
+ S + T RS S+ S ++ N + SN S + + +S +PS + P
Sbjct: 505 QKSPSNQTMHSNRSTPSKQSSPSNQTMHSNRSTPSNQSTPSNQTM--HSNRSTPSNQSSP 562
Query: 277 STGKTSICGDTS 312
S +T+ CG T+
Sbjct: 563 SNQRTTSCGLTT 574
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 31 GNCSVXDESSG---LFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLS 201
G+ +V G L + ++E++ R E + K S D + L+ S DN + +
Sbjct: 199 GSIAVGQNDGGFLILEAKTLEKVVGYKDRKEEISDIKFSPDGKFLAVGS---HDNYVDIY 255
Query: 202 NAPRRSRRGIAPYSESQSPSRGTCPSTGKTSIC 300
R R G+ P ++ SP+ STG + +C
Sbjct: 256 TVKRGKRIGVCPEAQVISPT-----STGTSRVC 283
>SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9)
Length = 171
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 527 LDHGNTSKSPNPQTTFIVKTRQRRYYLMAPSGEAARI 637
L H N S + P T + K Q + +L P+G+ R+
Sbjct: 134 LQHQNISGAKKPTNTIVGKVEQAQQWLNNPAGDHTRL 170
>SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)
Length = 256
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 85 ELQVRNSRT--ESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRS-RRGIAPYSESQS 255
EL +N+ T T+ED+ DD + A+D ++DN +N R R P E+Q
Sbjct: 185 ELGTQNTPTLFTPTDEDETQDDKKGEESATDRTKDNARYHNNRLRPGIHRSKPPAKENQP 244
Query: 256 PSRGTCPSTGK 288
T S+ K
Sbjct: 245 RRNETYTSSEK 255
>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
Length = 520
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +1
Query: 73 SSIEELQVRNSRTESTEE-DKR-SDDSRPLSHASDFS--RDNILSLSNAPRRSRRGIAPY 240
+ ++ ++ T+S+E+ KR S RP S S R + ++P+R R P
Sbjct: 269 AGLQSVKEEPETTQSSEQLPKRPSSPQRPKSPNRPASPQRPRSPNRPSSPQRPRSPNRPA 328
Query: 241 SESQSPSRGTC--PSTGKTSICGDTSSLLATKSNSAPT 348
S SQSPS P + S + ++SNS+P+
Sbjct: 329 STSQSPSSIMLDRPDSSPARPASQMSGVSLSRSNSSPS 366
>SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 70 SSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSES 249
SS+I +R ++ + S S ++ + S+ + ++AP SR+ YS S
Sbjct: 24 SSNITPSNTARNRAFNSGNQEGSTWSSFVTGKASTSKRPLSCSTSAPGSSRKRTLAYSSS 83
Query: 250 QSPSRGTCPST 282
PS+ + PS+
Sbjct: 84 SVPSKASSPSS 94
>SB_7479| Best HMM Match : Vinculin (HMM E-Value=0)
Length = 810
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 527 LDHGNTSKSPNPQTTFIVKTRQRRYYLMAPSGEAARI 637
L H N S + P T + K Q + +L P+G+ R+
Sbjct: 417 LQHQNISGAKKPTDTIVGKVEQAQQWLNNPAGDHTRL 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,088,398
Number of Sequences: 59808
Number of extensions: 438464
Number of successful extensions: 1544
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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