Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00966
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 38 0.006
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 38 0.006
At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S... 29 2.8
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr... 29 3.8
At3g12050.2 68416.m01497 Aha1 domain-containing protein contains... 29 3.8
At3g12050.1 68416.m01496 Aha1 domain-containing protein contains... 29 3.8
At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-contain... 29 3.8
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 28 5.0
At4g24680.1 68417.m03533 expressed protein 28 5.0
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At1g18650.1 68414.m02325 glycosyl hydrolase family protein 17 si... 28 5.0
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 28 6.6
At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-contain... 28 6.6
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 28 6.6
At3g18770.1 68416.m02382 expressed protein 28 6.6
At5g27060.1 68418.m03229 disease resistance family protein conta... 27 8.7
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 27 8.7
At4g25190.1 68417.m03626 hypothetical protein contains Pfam pro... 27 8.7
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 27 8.7
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 27 8.7
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 27 8.7
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKPRG 494
GYL K AK + WS+RWFV + +T Y + E+ RG
Sbjct: 584 GYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRG 623
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKPRG 494
GYL K AK + WS+RWFV + +T Y + E+ RG
Sbjct: 577 GYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRG 616
>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|O23627 Glycyl-tRNA
synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
{Arabidopsis thaliana}; contains Pfam profile PF00587:
tRNA synthetase class II core domain (G, H, P, S and T);
contains non-consensus TA acceptor splice site at intron
4
Length = 463
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 279 DREDFDLRRHVESAGH----QVELCPYVSVTSSSCRGYLHKLGAKF 404
DR D+DLR H E +GH Q +L + V + + +LG F
Sbjct: 404 DRSDYDLRAHSEKSGHALVAQEKLAEPIEVEKLAITPEMKELGPAF 449
>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 509
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 17 TTASSETVPSSTRVRACSHRRLKSCKSEILAPNQLRKTNAAMTVV 151
TT S+ET TR+ C+ R L +S I++ + +TNAA ++V
Sbjct: 210 TTRSNET----TRISLCTDRILSLLRSLIVSRYNIVQTNAAASIV 250
>At3g12050.2 68416.m01497 Aha1 domain-containing protein contains
Pfam PF05146: Aha1 domain; similar to Protein C14orf3
(HSPC322) (Swiss-Prot:O95433) [Homo sapiens]
Length = 321
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 396 AKFHTWSKRWFVFDRETKTFVYYWDKSE 479
AKF KRW V DR T V+ W SE
Sbjct: 2 AKFGEGDKRWIVEDRPDGTNVHNWHWSE 29
>At3g12050.1 68416.m01496 Aha1 domain-containing protein contains
Pfam PF05146: Aha1 domain; similar to Protein C14orf3
(HSPC322) (Swiss-Prot:O95433) [Homo sapiens]
Length = 360
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 396 AKFHTWSKRWFVFDRETKTFVYYWDKSE 479
AKF KRW V DR T V+ W SE
Sbjct: 2 AKFGEGDKRWIVEDRPDGTNVHNWHWSE 29
>At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-containing
protein (PH1) identical to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 145
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDR 440
G+L K G TW +RWFV R
Sbjct: 31 GWLTKQGDYIKTWRRRWFVLKR 52
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 130 KRSDDSRPLSHASDFSRDNILSLSNAPRRSRRGIAPYSESQSPSR 264
KRS DS +S +SD S + +R + PY+ S P R
Sbjct: 102 KRSPDSSQISSSSDSIGKKRKKTSLVMSKKKRRLLPYNPSNDPQR 146
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 199 SNAPRRSRRGIAPYSESQSPSRG---TCPSTGKTSICGDTSSLLATKSNSAPT 348
S +PR +P S PS G T PST ++ D+SS +A SNS P+
Sbjct: 66 SLSPRTESGPGSPSHLSNRPSSGGSVTRPSTADSNKAHDSSSSVAWDSNSRPS 118
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 193 SLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT 348
++S+ + I S S PS T P +GK S G S + S+P+
Sbjct: 284 TMSDPSNLNHHSIGQASSSSGPSSSTAPPSGKASAFGFNSHGIGIVLESSPS 335
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 193 SLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT 348
++S+ + I S S PS T P +GK S G S + S+P+
Sbjct: 308 TMSDPSNLNHHSIGQASSSSGPSSSTAPPSGKASAFGFNSHGIGIVLESSPS 359
>At1g18650.1 68414.m02325 glycosyl hydrolase family protein 17
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]; C-terminal homology only
Length = 184
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 226 GIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT 348
G A +S S PS TCP S G T+ + T S PT
Sbjct: 88 GTATFSASD-PSYTTCPFPASASGSGTTTPVTTTPSTRVPT 127
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +1
Query: 49 DESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPRRSRRG 228
DE SG + +L + E++ + + R L + + +SL + + G
Sbjct: 246 DEKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEG 305
Query: 229 IAPY-SESQSPSRGTCPSTGK---TSICGDTSSLLATK 330
A +E++ +GTCP++G ++C T+SLL ++
Sbjct: 306 RADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSE 343
>At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-containing
protein similar to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 144
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 375 GYLHKLGAKFHTWSKRWFVFDRETKTF 455
G+L K G TW +RWFV ++ K F
Sbjct: 32 GWLTKQGEYIKTWRRRWFVL-KQGKLF 57
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 247 SQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT 348
+ +PS G S T G +SSL AT S++APT
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSSSLFATPSSTAPT 442
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 210 TPQPTRHRTLQRVTEPLTRYLPVDREDFDLRRHVESAGHQVELC 341
+P PTR + V+ P +R+LP D R ES + C
Sbjct: 327 SPSPTRSDSHALVSHPCSRHLPPHPSDIPTGRRKESYPEEYSPC 370
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 34 NCSVXDESSGLFSSSIEEL 90
NCS +++ GLF SS+EE+
Sbjct: 864 NCSAFEDNLGLFGSSLEEV 882
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 378 YLHKLGAKFHTWSKRWFVFDRETKTFVYYWDKSEKKPRGG 497
++ G + +W KRWF+ R + F + D S +GG
Sbjct: 26 FISSKGLGWTSWKKRWFILTRTSLVF-FKNDPSALPQKGG 64
>At4g25190.1 68417.m03626 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 443
Score = 27.5 bits (58), Expect = 8.7
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Frame = +1
Query: 55 SSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSRDNILSLSNAPR------- 213
SS SSS + R T + SRP+ + S +NI+ N+
Sbjct: 36 SSSTSSSSSSSPSNSSKRVMITRSQSTTRSSRPIGSSDSKSGENIIPARNSASRSQEINN 95
Query: 214 -RSRRGIAPYSE--------SQSPSRGTCPSTGKTSIC----GDTSSLLATKSNSAPT 348
RSR A Y E S + SRG P S G S++ S+SAPT
Sbjct: 96 GRSRESFARYLEQRTRGSPRSNASSRGVKPGASSPSAWALSPGRLSTMKTPLSSSAPT 153
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 274 PSTGKTSICGDTSSLLATKSNSA-PT*A*LRVRAAGIYINW 393
P TGKTS+C + L+ + NS P + V A ++ W
Sbjct: 211 PGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKW 251
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 RGYLHKLGAKFHT-WSKRWFVFDRETKTFVYYWDKSEKKPRGGAYF 506
+GYL K A W +R+FV D + YY + K + Y+
Sbjct: 294 QGYLLKRSASLRADWKRRFFVLDNHGSLY-YYRNTGNKSAKSQHYY 338
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 27.5 bits (58), Expect = 8.7
Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 6/187 (3%)
Frame = +1
Query: 1 DSSVMDDSFIGNCSVXDESSGLFSSSIEELQVRNSRTESTEEDKRSDDSRPLSHASDFSR 180
D V+ DS + V + SS + + + L + ++ + +D ++ S + D
Sbjct: 332 DGEVLPDSGTVDVVVSEVSSDV-PAETQALNAISLDSQPSGKDSVVENGNSKSESEDSKM 390
Query: 181 DNILSLSNAPRRSRRGIAPYSESQSPSRGTCPSTGKTSICGDTSSLLATKSNSAPT*A*L 360
+ + + S I + ESQ S TC GK I + +L ++ + A +
Sbjct: 391 QSEIGAVDDGSVSDGSINTHPESQDASDPTCDQGGKQHISSEVKEVLDAPASEEISDAVI 450
Query: 361 RVRAAGIYINWAPSFTRGPKDGSFSTE-----KRKPSYTTGTRV-RRNPGAVHISSDRRS 522
+ G + + + GS S E ++ PS+ V N +V +S D +S
Sbjct: 451 VAKDNGSEAAISDGLSCTNQQGSESDEISGLVEKLPSHALHEVVSSANDTSVIVSDDTKS 510
Query: 523 VFRSRQH 543
S H
Sbjct: 511 QGLSEDH 517
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,873
Number of Sequences: 28952
Number of extensions: 292368
Number of successful extensions: 1119
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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