Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00965
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 28 1.3
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 27 3.1
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 27 4.1
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 5.4
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 26 5.4
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.2
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.2
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.2
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 9.5
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -2
Query: 594 NIY*ASTYKFNILIITLHNVSYAFCI 517
+++ TY + ILI T+++++YAFC+
Sbjct: 570 SLFFLDTYLWYILISTIYSLAYAFCL 595
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 314 NVEEMQKKFYDVI--DELEKKYIFKTVLAYVTEAFLFHSVEEVVF 442
NV++ +FY + +EL+K+Y+ KT+ T F+ ++E +F
Sbjct: 4 NVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTPGFV---IDEAIF 45
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 550 NNENVEFVSGSLVNVGLFLVPKDSNRSNFDSFSLILNSSEWAKARIQKSINEFANMVPHF 729
++E+V F S S V +F + R++ D F ++SSE S++ + P F
Sbjct: 219 SDESVSFSSSSSVIKRMFKEHESVLRNSMDDFHTAISSSEIELNYSNVSVSTLKLLEPKF 278
Query: 730 EHSIALKLS 756
E I L +S
Sbjct: 279 ER-ITLAMS 286
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 589 NVGLFLVPKDSNRSNFDSFSLILNSSEWAKARIQKSINEFANMVP 723
N G F DSN S SFS I N S + + S+++ VP
Sbjct: 315 NPGSFTTHLDSNASMAKSFSQISNDSLAKASSVATSMSQMGAAVP 359
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 308 IRNVEEMQKKFYDVIDELEKKYIFKTVLAYVTEAFL 415
+RN+ ++ KF+ + D LE+KY F LA FL
Sbjct: 460 LRNIHKL--KFWPLKDVLEQKYHFSAELAQQISDFL 493
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 406 GFPVPFCGRSCL-LELFEKSTA*YPVCTWWLYCRRLIYDTKSIA---DIVKSNNENVEFV 573
G+ +PF G + L + + S +PV + C +I +I N E + F+
Sbjct: 206 GYLLPFTGIAGLCIPIIHLSVGNFPVGDSIVVCCLNTMGNLNICKTTEIFSKNREQLIFM 265
Query: 574 SGSLVNVGLFLVPKDSNRSNFDSFSLI 654
+ L+PKDSNR F+ F +I
Sbjct: 266 GTPKFH----LLPKDSNRCFFNPFEII 288
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 568 IQHSHYYSSQCQLCFLYHILIFDNTT 491
+++SH S+QC LC ++ + NT+
Sbjct: 252 LENSHITSAQCLLCLGFYKIAMGNTS 277
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 595 QHLLSFHLQIQHSHYYSSQCQLCFLYHILIFDNTT 491
Q LL F L SH S QC LC Y+ + NT+
Sbjct: 272 QKLLEFGLD--RSHLTSVQCLLCLGYYDIGMGNTS 304
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 7.2
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 233 VLASKSILSCLYIPMMPDVEFKVISIRNVEEMQKKFYDVIDELEKKYIFKTVLAYVTEAF 412
+L ++ + + +P + DVE+ I NV FY +I EK Y+ V+
Sbjct: 1050 ILLTEILRTGKMLPRLNDVEYY---INNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFFWL 1106
Query: 413 LFHSVEEVVFLNYLKKVQPDIP 478
LF + F+ + K P IP
Sbjct: 1107 LFLYAKNGFFVQNISK-WPIIP 1127
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 338 FYDVIDELEKKYIFKTVLAYVTEAFLFHSVEEVVFLNYLKKVQP 469
F+ VI+ LE + + + E+ LFH + + NY KKV+P
Sbjct: 1022 FFPVINRLESEILG------IFESLLFHFDSILGYQNYWKKVEP 1059
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 107 GGCIAKQCECTQKLYAGCEE*LYLIHVTSVIPNL*V*DYTENVLASKSILSCLYIPMMPD 286
GG +AK C KL GCE + I + + + + +K+ CL+ P+ PD
Sbjct: 156 GGLVAK---CL-KLGFGCEVLAHDIKPNKELEKFGIQFVEQQEVLAKADFLCLHCPLTPD 211
Query: 287 VEFKV 301
E V
Sbjct: 212 TEHLV 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,401
Number of Sequences: 5004
Number of extensions: 72590
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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