Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00965
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0412 - 17729765-17730283,17731256-17731726                       31   0.81 
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    29   5.7  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    29   5.7  
08_02_1477 - 27375872-27376723,27376825-27377091                       28   7.5  
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204     28   7.5  
11_01_0608 + 4862663-4862974,4863239-4863285,4863592-4863775           28   9.9  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   9.9  

>10_08_0412 - 17729765-17730283,17731256-17731726
          Length = 329

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 24/105 (22%), Positives = 45/105 (42%)
 Frame = +1

Query: 481 CTWWLYCRRLIYDTKSIADIVKSNNENVEFVSGSLVNVGLFLVPKDSNRSNFDSFSLILN 660
           C  W   RR   D  ++ D   +N EN +  + +   V     PK+S +   D+    ++
Sbjct: 80  CQGWKKVRRKRLD--AVKD--DNNGENAKITNKNARKVSRRSAPKNSGKRKLDNVEPEVS 135

Query: 661 SSEWAKARIQKSINEFANMVPHFEHSIALKLSCVVVIKSMKLNSN 795
           SSE     I+ ++ +  ++   +  +  LK   V   K+ + N N
Sbjct: 136 SSESIDDDIELTVEDLLSIAEEYVKADRLKQHEVKTTKTARYNEN 180


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = +1

Query: 592 VGLFLVPKDSNRSNFDSF-SLILNSSE-----WAKARIQKSINEFANMVPHFEH--SIAL 747
           VG+FL PK S++S  + F   +LN  E     WAK  I   I+         +H   +A 
Sbjct: 190 VGMFLAPKMSHKSGSNDFWGALLNVEEIKNYNWAKYVIDHLIDVAPKAQHDIKHKDKVAN 249

Query: 748 KLSCVVVIKSMKLNS 792
           K  C ++++ + L++
Sbjct: 250 KAGCSLLLQILYLDN 264


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 334 LLHFFHISDTNDFKFNIWHHRYIKTTKNGF 245
           LLHF + SD ND   N+   R+    KNG+
Sbjct: 100 LLHFVYSSDYNDKDLNLVSLRFYLLRKNGY 129


>08_02_1477 - 27375872-27376723,27376825-27377091
          Length = 372

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 511 IYDTKSIADIVKSNNENVEFVSGSLVNVGLFLVPKDSNRSNFDSFSLILNSSEWAKARIQ 690
           + D  ++ D++  N++   FV          L+PK    +NF SF   LN+  + K  I 
Sbjct: 38  LVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRK--IV 95

Query: 691 KSINEFAN 714
               EFAN
Sbjct: 96  PDRWEFAN 103


>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
          Length = 306

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 KKCKRNSMMLLMNWKKNTYLKLFWLTS 401
           K+C R S M +  W+K  Y++  WL +
Sbjct: 223 KQCARESGMHMAPWRKQRYMEAKWLAT 249


>11_01_0608 + 4862663-4862974,4863239-4863285,4863592-4863775
          Length = 180

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 105 MVDVLQNNVSAPKNCMLAVRSNCISFMSLPSSPT 206
           M DV     S P++C+  V +N +   +LPS PT
Sbjct: 107 MFDVSVTGQSNPRSCIWFVVTNLVDADALPSKPT 140


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 317 VEEMQKKFYDVIDELEKKYIFKTVLAYVTEAFLFHSVEEVVFLNYLKKVQPD 472
           +EE   K  D   E+ K +I   V  Y + A +FH V   V    +KK  P+
Sbjct: 180 IEEFDAKVDDKELEIRKDFIIYHVHMYPSCAVIFHLVIYFVSQQVIKKFDPN 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,537
Number of Sequences: 37544
Number of extensions: 397963
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)