Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00965
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)                   30   2.5  
SB_2547| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.8  

>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
          Length = 772

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 643 MNQNYFCSNLWEQGIIQHLLSFHLQIQHSHYYSSQCQL 530
           +N   FC  + E GIIQ      L   H +Y+  QCQL
Sbjct: 622 LNDKGFCLQMTEHGIIQ------LNTNHQYYHQVQCQL 653


>SB_2547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +1

Query: 514 YDTKSIADIVKSNNENVEFVSGSLVNVGLFLVPKDSNRS 630
           Y ++S++D++K N   +EFV G+ V++ L+ +P   +RS
Sbjct: 189 YMSESMSDVIKRNLLKIEFV-GATVSMELWELPYKGSRS 226


>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +2

Query: 308 IRNVEEMQKKFYDVIDE--LEKKYIFKTVLAYVT 403
           +++V E+ KKF  +IDE   E K+++K++  Y++
Sbjct: 378 LKSVSELMKKFDPMIDEKAAETKFMWKSIRPYIS 411


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 622  SNLWEQGIIQHLLSFHLQIQHSHYYSSQCQLC 527
            ++ W  GI+     +H+++ H+H    QCQ+C
Sbjct: 978  TSAWHTGIV-----YHVRVHHTHERPFQCQIC 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,345,894
Number of Sequences: 59808
Number of extensions: 492269
Number of successful extensions: 1146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)