Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00965
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbona... 30 1.7
AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transpo... 30 1.7
AF497830-1|AAM18108.1| 533|Caenorhabditis elegans putative Na-H... 30 1.7
AF098995-2|AAC67478.2| 538|Caenorhabditis elegans Na/h exchange... 30 1.7
AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchange... 30 1.7
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 29 2.9
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 29 5.1
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 29 5.1
AF022970-8|AAB69901.2| 231|Caenorhabditis elegans Nuclear hormo... 28 8.9
>U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform a protein.
Length = 959
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 163 GVTVSHSCHFRHPQLMSLRLHRKCSCVQIHS 255
G CHFR P+ S +H+ C+ IHS
Sbjct: 126 GANTPRRCHFRRPKSTS-EMHQSCTSATIHS 155
>AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion
transporter ABTS-3 protein.
Length = 959
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 163 GVTVSHSCHFRHPQLMSLRLHRKCSCVQIHS 255
G CHFR P+ S +H+ C+ IHS
Sbjct: 126 GANTPRRCHFRRPKSTS-EMHQSCTSATIHS 155
>AF497830-1|AAM18108.1| 533|Caenorhabditis elegans putative Na-H
exchanger isoform 6 protein.
Length = 533
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 797 IFEFNFMLLITTTHDNFSAMLC-SKCGTIFANSFIDFCILALAHSEEFKISENESKLLLF 621
+F+ + + DNF +++C + GT+F I F + A++ + F + +LLF
Sbjct: 120 VFDAGYFMPARQFFDNFGSIMCFAMIGTLFNFLAISFSLWAISLTGLFSVETPLLHMLLF 179
Query: 620 ESLGTRNNP 594
S+ +P
Sbjct: 180 GSVAADVDP 188
>AF098995-2|AAC67478.2| 538|Caenorhabditis elegans Na/h exchanger
protein 6, isoform a protein.
Length = 538
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 797 IFEFNFMLLITTTHDNFSAMLC-SKCGTIFANSFIDFCILALAHSEEFKISENESKLLLF 621
+F+ + + DNF +++C + GT+F I F + A++ + F + +LLF
Sbjct: 120 VFDAGYFMPARQFFDNFGSIMCFAMIGTLFNFLAISFSLWAISLTGLFSVETPLLHMLLF 179
Query: 620 ESLGTRNNP 594
S+ +P
Sbjct: 180 GSVAADVDP 188
>AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchanger
protein 6, isoform b protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 797 IFEFNFMLLITTTHDNFSAMLC-SKCGTIFANSFIDFCILALAHSEEFKISENESKLLLF 621
+F+ + + DNF +++C + GT+F I F + A++ + F + +LLF
Sbjct: 120 VFDAGYFMPARQFFDNFGSIMCFAMIGTLFNFLAISFSLWAISLTGLFSVETPLLHMLLF 179
Query: 620 ESLGTRNNP 594
S+ +P
Sbjct: 180 GSVAADVDP 188
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 625 CSNLWEQGIIQHLLSFHLQIQHSHYYSSQCQLCFLYHILIFDNTTTKCI 479
C + I L +QH+ +YS QC + + Y ++ D+ KC+
Sbjct: 862 CDCTTDPNFIDPCLPHGYYVQHNGFYSCQCDVGYKY--VLLDSNVGKCV 908
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 302 ISIRNVEEMQKKFYDVIDELEKKYIFKTVLAYVTEAFLFHSVEEVVFLNYL--KKVQPDI 475
+ +RN + KKF D E F VL Y T+ + + EE +++N L ++ QP+I
Sbjct: 293 VDLRNEAKALKKFSDNFSSKETGIKFPIVLGY-TKNVIVETFEEGIYINRLVAEEGQPEI 351
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 269 IPMMPDVEFKVISIRNVEEMQKKFYDVIDELEKK 370
IP+ D + I + ++EM KK Y + +EL K
Sbjct: 14 IPLYTDDDLDFIKVDILDEMYKKSYSIFNELRSK 47
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 269 IPMMPDVEFKVISIRNVEEMQKKFYDVIDELEKK 370
IP+ D + I + ++EM KK Y + +EL K
Sbjct: 14 IPLYTDDDLDFIKVDILDEMYKKSYSIFNELRSK 47
>AF022970-8|AAB69901.2| 231|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 118 protein.
Length = 231
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 670 IQRSSK*VKMN--QNYFCSNLWEQGIIQHLLSFHLQIQHSHYYSSQCQLCFL 521
IQR V N + +F ++WE+ + SFH Q H Y ++C+ C L
Sbjct: 25 IQRHYGTVSCNGCKGFFRRSIWEKRTYK--CSFHNQCSIEHKYRNRCRACRL 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,675,946
Number of Sequences: 27780
Number of extensions: 400564
Number of successful extensions: 1124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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