Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00965
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 281 PDVEFKVISIRNVEEMQKKFYDVIDELEKKYIFKTVLAYVTEAFLFHSVEEVVFLNYL 454
           P VE+ ++ +    E  KK+Y   DE      F   L   T  +  + +   V ++YL
Sbjct: 197 PSVEWDILGVP--AERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 535 DIVKSNNENVEFVSG 579
           +IV  NN+ ++F+SG
Sbjct: 339 EIVAKNNDTLQFISG 353


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 412 PVPFCGRSCLLELFEKSTA 468
           PVPF G +  L L +KSTA
Sbjct: 39  PVPFFGTTKDLILVKKSTA 57


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 610 PKDSNRSNFDSFSLILNSSEWAKARIQKSINEFANMVPHFE 732
           P+  N     +  L L     + ARI K+I  F   V H E
Sbjct: 79  PESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHVE 119


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 538 IVKSNNENVEFVSGS 582
           ++KS NE  +F SGS
Sbjct: 519 LIKSENEAADFFSGS 533


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 538 IVKSNNENVEFVSGS 582
           ++KS NE  +F SGS
Sbjct: 519 LIKSENEAADFFSGS 533


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 538 IVKSNNENVEFVSGS 582
           ++KS NE  +F SGS
Sbjct: 519 LIKSENEAADFFSGS 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,401
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)