Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00964
         (427 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.40 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   2.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   8.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   8.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   8.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 118 SFGGDERRRSPARESYRKPS-GXXPPRHPRIGTRPLRPFRGRTLRSRH 258
           S GG     SP+  +  K S    PP HP  G++ L    G     +H
Sbjct: 50  SMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDRASGKH 97


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 309 QRTAS*RRHASAVCRDRMPRAQSAA 235
           Q  A  R H  A+C+D  P  + AA
Sbjct: 163 QMKADLRSHFRALCQDDTPMVRRAA 187


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 341 KPPWTQFHQIQRRSIL 388
           K  W QFH +Q   I+
Sbjct: 26  KELWDQFHDLQTEMII 41


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 345 LHGRSSIKSKEEASSTEED 401
           L   +S+K K EA   +ED
Sbjct: 876 LENHTSVKIKREAEDRDED 894


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 EASSTEEDWDADDKE 422
           + SST  D D DD+E
Sbjct: 190 QGSSTNNDEDDDDEE 204


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 EASSTEEDWDADDKE 422
           + SST  D D DD+E
Sbjct: 190 QGSSTNNDEDDDDEE 204


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 EASSTEEDWDADDKE 422
           + SST  D D DD+E
Sbjct: 190 QGSSTNNDEDDDDEE 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,344
Number of Sequences: 336
Number of extensions: 1271
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)