Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00964
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    29   0.40 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   2.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.5  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 297 RRFADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDADD 416
           +RFAD + N +++ +S     ++ + +E S  EED D+DD
Sbjct: 77  KRFADWSFNASKSGKSNKDHKNLNNTKEISLNEED-DSDD 115


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 304  SLIEPSITTVPLEASMDAVPSNPKKKHPQL 393
            S IE   +T+PL+AS    P  P    PQ+
Sbjct: 1417 SSIEDETSTMPLKASQPTNPGAPSNHAPQV 1446


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 313 EPSITTVPLEASMDAVPSNPKK 378
           EPS+ T+ L+  +  VPS P K
Sbjct: 495 EPSVQTIQLQGKIRVVPSKPFK 516


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 IGTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGSL-IEPSITTVPLEASMDAV 360
           +GT  L  F+ +T    H I    ++ PP     L   P+  T+PLE   + V
Sbjct: 425 LGTSSLTHFQDKTTAIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEPEEELV 477


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 259 PIAAHRARVPPLRGGSLIEPSITTVPLEASMDAVPSN 369
           P   H    PP+R  S I PS+   PL  +  + P N
Sbjct: 738 PAVKHHPPPPPVR--SSISPSMPPAPLTHANSSTPMN 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,098
Number of Sequences: 5004
Number of extensions: 22598
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)