Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00964
(427 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2) 34 0.057
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 32 0.23
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.53
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 31 0.53
SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 29 1.6
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12) 28 2.8
SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13) 28 3.7
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 27 4.9
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 27 4.9
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 27 4.9
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_57458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 27 8.6
SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20) 27 8.6
SB_23742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 27 8.6
SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 27 8.6
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 27 8.6
>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 401
Score = 33.9 bits (74), Expect = 0.057
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +1
Query: 178 GXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGSLIEPSITTVPL 339
G PP PR +P RGR LR RH PP R G ++EP+ TT P+
Sbjct: 360 GTEPPLPPRT-----KPARGRNLRPRHS--------PPRRRGGVLEPTPTTHPM 400
>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 32.7 bits (71), Expect = 0.13
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 115 RSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLR-SRHPIAAHRAR 282
RS G ER RSP R R PSG + RP FR R+ R SR + R+R
Sbjct: 271 RSRDGRERSRSPHRSRVRSPSGSRDSKGFWQEERPRDDFRDRSYRGSRSLTQSRRSR 327
>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 312 RTLNYNRAFRSLHGR---SSIKSKEEASSTEEDWDADDKEE 425
RT +Y R + S H +I+ EE+S +E+ D DD+EE
Sbjct: 66 RTTHYQRTYPSWHAHREVPAIRKSEESSLEDEEDDEDDEEE 106
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 190 PRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGSLIEPSITTVPLEASMDAVPSN 369
P PR P R + LR+ HP + R P RG + PS ++ P+ + +
Sbjct: 5 PSRPRRNNSPSSSSRPQPLRATHPFSLLR-NPSPTRGNPIRRPSPSSSPVHGNETGL--K 61
Query: 370 PKKKHPQLK 396
PK+ P+ +
Sbjct: 62 PKRTSPETR 70
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 30.7 bits (66), Expect = 0.53
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = +1
Query: 88 RQENYGGERRSFGGDERRRSPA-RESYRKPS-------GXXPPRHPRIGTRPLRPFRGRT 243
R + GG+RRSF + R P R R P+ PPRH R P R R
Sbjct: 52 RDDRRGGKRRSFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRK 111
Query: 244 LRSRHPIAAHRARVPPLR 297
RS + + + P+R
Sbjct: 112 RRSSYESPSPQPFPSPVR 129
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 30.7 bits (66), Expect = 0.53
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 115 RSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGR 240
R GG R P ++ +P G P P G PLRP G+
Sbjct: 460 RPLGGQNPPRPPDGQNPLRPLGGQNPPRPSGGQNPLRPLGGQ 501
>SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 276 RSRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDA 410
RSR SF +DR LN A + +S+ K EASS W+A
Sbjct: 566 RSRDSF---HSDRQLNKKTAIARSNTSTSVADKSEASSALASWEA 607
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +1
Query: 130 DERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRA 279
D+RRRS + +R+ R PR R P R R RSR P HR+
Sbjct: 208 DQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRR--RSRSPSPHHRS 255
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +1
Query: 112 RRSFGGDERRR-----SPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHR 276
RRS RRR SP+R P+ PPR R P P R R S P
Sbjct: 888 RRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRS 947
Query: 277 ARVPP 291
+ +PP
Sbjct: 948 SPLPP 952
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 109 ERRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRAR 282
E ++ GG+ R+ E PR P + + +PF+ + S HP R+R
Sbjct: 241 ETKAEGGEAPRKDDGSEGSAPSEPVASPRKPSLASAVPQPFKRPSFTSSHPQPHPRSR 298
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 169 KPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGSLIEPSITTVPLEAS 348
KPS P P T P++P T P P + I+PS +T P++ S
Sbjct: 1298 KPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPIKPSPSTTPIKPS 1357
Query: 349 MDAVP 363
P
Sbjct: 1358 PSTTP 1362
Score = 27.9 bits (59), Expect = 3.7
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Frame = +1
Query: 121 FGGDERRRSPARE-SYR--KPSGXXPPRHPR---IGTRPLRPFRGRTLRSRHPIAAHRAR 282
+G + SP+ SY+ KPS P P T P++P P
Sbjct: 1237 YGRQQHIGSPSSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTP 1296
Query: 283 VPPLRGGSLIEPSITTVPLEASMDAVPSNPKKKHPQLK 396
+ P + I+PS +T P++ S P P +K
Sbjct: 1297 IKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIK 1334
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 190 PRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVP--PLRGGSLIEPSITTVPLEASMDAVP 363
P P T P++P T S PI + P P + I+PS +T P++ S P
Sbjct: 1275 PIKPSPSTNPIKPSPSTT--STTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTP 1332
Query: 364 SNP 372
P
Sbjct: 1333 IKP 1335
>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
Length = 1020
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 250 SRHPIAAHRARVPPLRGG---SLIEPSITTVPLEASMDAVPSNPKKKHP 387
+RHP+ + R P++ + I+PS +T P++ S + P K P
Sbjct: 323 TRHPLTSITTRTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPIKPSP 371
>SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)
Length = 405
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 276 RSRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDADDKE 422
R +S + F D L + A GR+S K KE+ E+D D D++
Sbjct: 2 RGSSSDSDDFRDVNLTLSPAHMMAKGRNSDKQKEKDKDAEKDKDGLDRK 50
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 27.5 bits (58), Expect = 4.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 166 RKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAA----HRARVPPLRGGSLIEPSITTV 333
R+ SG PP + R+ +P+ +LR++ PI A H + P+ S PS+
Sbjct: 441 RQRSGM-PPMNRRLSRGGEKPYTKGSLRNKQPINANSHCHPSVDQPINANSHCHPSVDQ- 498
Query: 334 PLEASMDAVPS 366
P+ A+ PS
Sbjct: 499 PINANPHCHPS 509
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.5 bits (58), Expect = 4.9
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Frame = +1
Query: 103 GGERRSFGGDERRRSPARES-------YRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHP 261
GG R S G +R R P RES R+P P +H +P R R P
Sbjct: 548 GGSRWSQGDRDRDRGPDRESSVGSYDDEREPRDHKPSQHQDYPEKPEHSIPKAENRERMP 607
Query: 262 IAAHRARVPPLRGGSLIEPSITTVPLE 342
+++ + R G + + PL+
Sbjct: 608 SVENKSELAEERKGKKKKEKKSKRPLQ 634
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 258 SYRGTPRSRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEEASSTE 395
SY +PR A+ +R + + Y + GR+ I +K++ S E
Sbjct: 109 SYEVSPRKNAAKSRNISKKVFFYRNGDKHFKGRTLIVTKQKYGSFE 154
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 250 SRHPIAAHRARVPPLRGG---SLIEPSITTVPLEASMDAVPSNP 372
+RHP+ + R P++ + I+PS +T P++ S P P
Sbjct: 247 TRHPLTSITTRTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKP 290
>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = +1
Query: 133 ERRRSPARESYRKPSGXXPPRHPRIGTRPLRPF-RGRTLRSRHPIAAHRARVPPLRGGSL 309
E RS ES KP H R+ T + PF + R + PIA + P +
Sbjct: 665 EEPRSSEEESKPKPGRPKGTHHLRLVTTAVSPFLKSRAKKQPSPIAEEPSPETPRKPEPE 724
Query: 310 IEPSITTVPLEASMDAVPSNPKK 378
+ E ++ P+ KK
Sbjct: 725 VTQDRDESDEEPQVEFTPTEKKK 747
>SB_57458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 139 FVHPHRRTSFRLRNFPALSCRTRRNDRRCLHGYV 38
F++PHR+ R R L C +R+ R C G+V
Sbjct: 53 FIYPHRQYGTRSRFADRLGCLSRK--RPCEQGWV 84
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 282 RASFTRRFADRTLNYNRAFRSLHGRSS--IKSKEEASSTEEDWDAD 413
R +++ RT+ YN RSL + S +K + + + + W AD
Sbjct: 1844 REEISKKLEKRTVEYNGVVRSLREKESSIVKLRVQFDNIGQGWRAD 1889
>SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)
Length = 112
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 264 RGTPRSRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEE 380
RG+ F+R F+D+T N + G SS++ ++E
Sbjct: 33 RGSVTLSQQFSRSFSDKTHNAKSSDAKTDGESSVEEEKE 71
>SB_23742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 193 RHPRIGTRPLRPFRGRT-LRSRHPIA 267
RHP +RP GRT + RHP A
Sbjct: 43 RHPAAERTDIRPLNGRTYIMERHPAA 68
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 109 ERRSFGGDERRRSPARESYRKPSGXXPPRHPRIG-TRPLRPFRGR-TLRSRHPIA-AHRA 279
ER + + R +P + S R P RHPR G P P R ++ S+ P+ A+R
Sbjct: 1173 ERDAVTYNRLRAAPYKISSRSPESRPSDRHPRHGYNEPRSPQMERPSMSSQWPVGDAYRT 1232
Query: 280 RVP 288
P
Sbjct: 1233 EGP 1235
>SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 154 RESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGS 306
++SY P G P + R + P++G + R++ R V P +GGS
Sbjct: 100 KDSYSVPRGVLPHQGGHTVPRGVIPYQGGSYRTKEGYTDQRG-VIPYQGGS 149
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 26.6 bits (56), Expect = 8.6
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Frame = +1
Query: 115 RSFGGDERRRSPARESY--RKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVP 288
RS G + R RSP Y R P P + R G RPL P R R P
Sbjct: 1088 RSPGRERRSRSPYGREYRDRSPLRRPPAEYDRHG-RPLPPPPDDYWRREAWERERRKSPP 1146
Query: 289 PL---RGGSLIEPSITT 330
PL RGG + + T
Sbjct: 1147 PLDWERGGQSYDRELDT 1163
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 109 ERRSFGGDERRRSPARESYRKPSGXXPPRHPRIG-TRPLRPFRGR-TLRSRHPIA-AHRA 279
ER + + R +P + S R P RHPR G P P R ++ S+ P+ A+R
Sbjct: 570 ERDAVTYNRLRAAPYKISSRSPESRPSDRHPRHGYNEPRSPQMERPSMSSQWPVGDAYRT 629
Query: 280 RVP 288
P
Sbjct: 630 EGP 632
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,503
Number of Sequences: 59808
Number of extensions: 201048
Number of successful extensions: 866
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -