Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00964
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 39 0.001
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 36 0.016
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 35 0.028
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 0.60
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 2.4
AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical ... 28 3.2
AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 27 5.6
AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 27 7.4
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 27 7.4
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 26 9.8
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 26 9.8
AL023828-26|CAA19455.2| 431|Caenorhabditis elegans Hypothetical... 26 9.8
AL023828-12|CAA19456.1| 492|Caenorhabditis elegans Hypothetical... 26 9.8
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 26 9.8
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 39.1 bits (87), Expect = 0.001
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Frame = +1
Query: 88 RQENYGGERRSFGGDERR---RSPARESYRKPSGXXPPRHPRIGTR--PLRPFRGRTL-R 249
R + +RR GD RR RS R + R+ S R R R P R R R+ R
Sbjct: 50 RSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSRTRSRDR 109
Query: 250 SRHPIAAHRARVPPLRGGSLIEPSITTVPLEASMDAVPSNPKKKHPQLKKIGMLTTKK 423
R P R PP R P + +P D +P NP+ P+ K+ + ++
Sbjct: 110 RRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSPPKNAKLELTAEER 167
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.016
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +1
Query: 112 RRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLR----PFRGRTLRSRH--PIAAH 273
RR +R RSP R + R PS PPR RI P+R P R + RSR P
Sbjct: 95 RRDDSPRKRSRSPPRRTRRSPS---PPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQ 151
Query: 274 RARVPP 291
R+R PP
Sbjct: 152 RSRSPP 157
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 34.7 bits (76), Expect = 0.028
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 88 RQENYGGERRS-FGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPI 264
RQ++ G RRS +G D+RR R+ R R PR P P R RT RS
Sbjct: 863 RQDDMGARRRSRWGDDDRRDDDRRDDRRDDRRESRRRSPR---SPRSPDR-RTRRS---- 914
Query: 265 AAHRARVPPLRGGSLIEPSITTVPLEASMDAVPSNP 372
++ PP++ S+ E ++++ L+ +V P
Sbjct: 915 PSYEREEPPVKKTSVEEETVSSTTLDELKPSVEPTP 950
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 0.60
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 136 RRRSPARESYRKPSGXXPP----RHPRIGTRPLRPFRGRTLRSRHPIAAHRARVP 288
RRRSP++ P PP R P P P R ++ RS+ P A R R P
Sbjct: 390 RRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKS-RSKSPPAPRRRRSP 443
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 100 YGGERRSFGGDERRRSPAR-ESYRKPSGXXPPRHPRIGTRPL 222
+GG+++ FG ++ ++ R + P+G PP P G+ PL
Sbjct: 208 FGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPL 249
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 100 YGGERRSFGGDERRRSPAR-ESYRKPSGXXPPRHPRIGTRPL 222
+GG+++ FG ++ ++ R + P+G PP P G+ PL
Sbjct: 229 FGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPL 270
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 100 YGGERRSFGGDERRRSPAR-ESYRKPSGXXPPRHPRIGTRPL 222
+GG+++ FG ++ ++ R + P+G PP P G+ PL
Sbjct: 214 FGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPL 255
>AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical
protein Y47D3A.5 protein.
Length = 222
Score = 27.9 bits (59), Expect = 3.2
Identities = 26/93 (27%), Positives = 37/93 (39%)
Frame = +1
Query: 112 RRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPP 291
RR F R+P+R S P PP P RT + P+A R P
Sbjct: 67 RRQFRSVRLPRTPSRNSPLTPPTKTPPHTPT-----------RTPTTESPVA---PRTPG 112
Query: 292 LRGGSLIEPSITTVPLEASMDAVPSNPKKKHPQ 390
S +E ++ P E+++ A P KK P+
Sbjct: 113 KVVISSVEKQESSAPDESTIAATPKKSSKKSPK 145
>AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical
protein C16A11.5 protein.
Length = 643
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 279 SRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDADD 416
+R+ F ++F +R LH IK K E S +E WD D+
Sbjct: 383 NRSPFLKQFLHNQKACHRLV-GLHCDLCIKEKVEKSENQEAWDLDE 427
>AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 26.6 bits (56), Expect = 7.4
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +2
Query: 5 EKE*RWRDQPKDVAMKAAAVITAGPTAQGRKITEAKGGPSVGMNEDDRPPEKATANQAV 181
E E W DQP + A+ A A P+ Q + K P R PEKA + V
Sbjct: 64 ENEEEWDDQPSEEALGLIAKNEASPSKQQQPPPPPKSSP--------RKPEKAQKEEKV 114
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 26.6 bits (56), Expect = 7.4
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 PPRHPRI--GTRPLRPFRGRTLRSRHPIAAHRARVPPLRGGSLIEPSITTVPLEASMDAV 360
P PRI T P + +TLRS A H VP + G ++ EP +T+P ++D V
Sbjct: 1542 PSPVPRILGVTIPESAHQTQTLRS----AVHTPTVPKILGVTVPEPLRSTIP-GITVDLV 1596
Query: 361 PSNPKKKH 384
P+ H
Sbjct: 1597 DPVPRTTH 1604
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 26.2 bits (55), Expect = 9.8
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = +1
Query: 136 RRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAH-----RARVPPLRG 300
R RSP RES R+ P P R + RSR P+ A R+ PP G
Sbjct: 124 RSRSPVRESRRRSESRSP--------SPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNG 175
Query: 301 G 303
G
Sbjct: 176 G 176
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 175 SGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPP 291
SG P +HP + +RP +L PIA +A PP
Sbjct: 1950 SGSNPVKHPPQAPQIVRPTLESSLGMPAPIAVSKAIPPP 1988
>AL023828-26|CAA19455.2| 431|Caenorhabditis elegans Hypothetical
protein Y17G7B.10a protein.
Length = 431
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 17 RWRDQPKDVAMKAAAVITAGPTAQGRKITEAKGGPSV 127
RW D P+ A + ++ P + R I+EA P V
Sbjct: 215 RWTDNPRSPAREIEECMSLSPPVKKRMISEAVEIPEV 251
>AL023828-12|CAA19456.1| 492|Caenorhabditis elegans Hypothetical
protein Y17G7B.10b protein.
Length = 492
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 17 RWRDQPKDVAMKAAAVITAGPTAQGRKITEAKGGPSV 127
RW D P+ A + ++ P + R I+EA P V
Sbjct: 276 RWTDNPRSPAREIEECMSLSPPVKKRMISEAVEIPEV 312
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 175 SGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAAHRARVPP 291
SG P +HP + +RP +L PIA +A PP
Sbjct: 575 SGSNPVKHPPQAPQIVRPTLESSLGMPAPIAVSKAIPPP 613
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,894
Number of Sequences: 27780
Number of extensions: 141050
Number of successful extensions: 623
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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