Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00964
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    34   0.035
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    33   0.081
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    33   0.081
At1g78230.1 68414.m09116 leucine-rich repeat family protein            29   1.00 
At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing pr...    28   2.3  
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge...    28   2.3  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    28   3.0  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   4.0  
At1g69485.1 68414.m07984 hypothetical protein                          27   5.3  
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    26   9.3  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    26   9.3  
At3g07220.1 68416.m00861 transcriptional activator, putative sim...    26   9.3  
At1g44850.1 68414.m05138 hypothetical protein                          26   9.3  
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    26   9.3  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 34.3 bits (75), Expect = 0.035
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +1

Query: 88  RQENYGGERRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFR-----GRTLRS 252
           R+  + G R+S     RRRSP+  + R+ S   P R  R  + P R  R      R  RS
Sbjct: 293 RRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRS 352

Query: 253 RHPIAAHRARVPPLR 297
             P A      PP R
Sbjct: 353 PSPPARRHRSPPPAR 367


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +1

Query: 103 GGERRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPL-RPFRGRTLRSRHPIAAHRA 279
           G   R  G    RR PA  S  +     PPR  R   R   R  RG  +R R P+   R 
Sbjct: 248 GSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 307

Query: 280 RVPPLR 297
             PP R
Sbjct: 308 SPPPRR 313


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +1

Query: 103 GGERRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPL-RPFRGRTLRSRHPIAAHRA 279
           G   R  G    RR PA  S  +     PPR  R   R   R  RG  +R R P+   R 
Sbjct: 255 GSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRR 314

Query: 280 RVPPLR 297
             PP R
Sbjct: 315 SPPPRR 320


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 327 NRAFRSLHGRS----SIKSKEEASSTEEDWDADDKEE 425
           NR F   H       S+KSKEE + T E+ D +D++E
Sbjct: 164 NREFSKFHVHERAVESVKSKEEVTDTSENGDDNDEDE 200


>At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 186

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +1

Query: 235 GRTLRSRHPIAAHRARVPPLRGGSLIEPSITTVPLEASMDAVPSNPKKKHP 387
           G+ LRSR+ IAA     P  R   L + +  TVP +   D VP +PK   P
Sbjct: 119 GKKLRSRNEIAAFVEANPEFRNAPLGDFNF-TVP-KVMEDTVPPDPKLGSP 167


>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 486

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 169 KPSGXXPPRHPRIGTRPLRPFRGRTLRSRHPIAA 270
           KPSG  PPR   +G     P++ R  +++ P+ +
Sbjct: 438 KPSGYPPPRENCVGPSCTNPYKYRDSKTKVPLCS 471


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 91  QENYGGERRSFGGDERRRSPARESYRKPSGXXPPRHPRIGTRPLRPFRGR 240
           + NYG    S   +  +  P   +  KP+   PPR    GT P +P +G+
Sbjct: 370 ETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPPR----GTPPAKPSKGK 415


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
            similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
            [Drosophila melanogaster]
          Length = 926

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -2

Query: 264  DRMPRAQSAATEGAERAGADARVSRGXXTAWFAVAFSGGR---SSSFIPTEGPPFASV 100
            D +  +   AT G+   G+  R SRG          SGGR    +SF+   G P + +
Sbjct: 843  DSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRRGSGTSFVSATGEPVSGI 900


>At1g69485.1 68414.m07984 hypothetical protein
          Length = 125

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 147 RSSSFIPTEGPPFASVIFLP*AVGPAVMTAAAFMATSFGWSLHL 16
           R  S++    PP  S I    A  P V+    F++ SFG S+ L
Sbjct: 22  RCFSYVAAISPPLDSAIDRSTASPPLVLPEFGFLSFSFGGSMEL 65


>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 258 SYRGTPRSRASFTRRFADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDADDKEE 425
           S +G  R R + T+R   R    ++  R     SS+     +   +ED D +D+E+
Sbjct: 647 STKGKGRKRPATTKRGRGRGSGTSKRGRKNESSSSLNRLLSSKDDDEDEDDEDREK 702


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 130 DERRRSPARESYRKPSGXX----PPRHPRIGTRPLRPFRGRT 243
           +E +     ES+RK S       PP+  RI  +PL  FRG T
Sbjct: 287 NEEKPKKTTESFRKTSDSACVVFPPKVFRIMEKPLYEFRGHT 328


>At3g07220.1 68416.m00861 transcriptional activator, putative
           similar to transcriptional activator FHA1 [Nicotiana
           tabacum] gi|15705932|gb|AAL05884
          Length = 320

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 321 NYNRAFRSLHGRSSIKSKEEASSTEEDWDADDKEE 425
           NY     S  G+  ++S+E     +ED D DD EE
Sbjct: 142 NYQSGPGSGSGKKGVRSRELYEYDDEDDDDDDDEE 176


>At1g44850.1 68414.m05138 hypothetical protein
          Length = 266

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 136 RRRSPARESYRKPSGXXPPRHPRIGTRPLR 225
           R  SP R  +R PS   P R  +   +PLR
Sbjct: 15  RPMSPTRHYWRPPSALAPVRGNQFAVQPLR 44


>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 303 FADRTLNYNRAFRSLHGRSSIKSKEEASSTEEDWDADDKEE 425
           F   TL  N+  RS HG  ++   E+   TEE+ +   K+E
Sbjct: 26  FLSPTLT-NQLVRSFHGSRTMSESEKKILTEEELERKKKKE 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,738,503
Number of Sequences: 28952
Number of extensions: 137045
Number of successful extensions: 623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)