Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00963
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682     29   3.6  

>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
          Length = 511

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 191 VSSQCTVSSLTCVLTE*LIEMSHESPYREHCSF*MRVKIECEPFVFLICEINYLNVKCLI 370
           +S     SS  C  T  L+ M   S   EH S       +C    +L C +  L + CL+
Sbjct: 133 ISMFLAFSSFVCGCTFMLLRMQRLSAREEHISGFHHAISKC--LFYLCCVLPVLTILCLL 190

Query: 371 VFGEQKKYV 397
           +   +K Y+
Sbjct: 191 LVMPRKPYI 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,758
Number of Sequences: 37544
Number of extensions: 288261
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)