Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00963
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_52789| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.099
SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 31 0.70
SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046) 31 0.92
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39) 30 1.6
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 30 1.6
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 30 2.1
SB_46971| Best HMM Match : EspF (HMM E-Value=3.1) 30 2.1
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_43173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 29 4.9
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5) 28 6.5
SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43) 28 6.5
SB_9890| Best HMM Match : TIG (HMM E-Value=0.17) 28 8.6
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYV-VYV 193
Y+Y+ ++++Y T TY Y + T+TY Y T TYV VYV
Sbjct: 20 YIYI-YIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYV 59
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYV-VYV 193
TY Y + + Y T TY Y +V V + YVY+ YV VYV
Sbjct: 35 TYTYT-YTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYV 75
Score = 34.3 bits (75), Expect = 0.099
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 74 YVYV-RHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYV-VYV 193
Y+Y + + Y T TY Y + T+TYVY+ YV VYV
Sbjct: 26 YIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYV 67
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTY 181
Y+Y+ ++++Y+ Y Y + T+TY Y T TY
Sbjct: 14 YIYI-YIYIYIYIYIYTYTYTYTYTYTYTYTYTYTY 48
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 165 IYTYVCVLTRTCAYLYVHVHTYTCMXRTYTY 73
IY Y+ + T T Y Y + +TYT TYTY
Sbjct: 21 IYIYIYIYTYTYTYTYTYTYTYT-YTYTYTY 50
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYVSS 199
TY YV +++VYV Y Y +V V + Y+Y+ +++S+
Sbjct: 51 TYTYV-YVYVYVYVYVYVYVYVYVYVYIYIYLYDSIAYLHISA 92
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYV 193
TY Y +++VYV Y Y +V V + Y+YI + Y+
Sbjct: 49 TYTYT-YVYVYVYVYVYVYVYVYVYVYVYIYIYLYDSIAYL 88
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTY 181
Y+Y+ ++++Y+ Y Y + T+TY Y T TY
Sbjct: 10 YIYI-YIYIYIYIYIYIYIYTYTYTYTYTYTYTYTY 44
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYV 184
TY Y + + Y T Y Y +V V + YVY+ Y+
Sbjct: 41 TYTYT-YTYTYTYTYVYVYVYVYVYVYVYVYVYVYVYI 77
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 171 VPIYTYVCVLTRTCAYLYVHVHTYTCMXRTYTY 73
V Y Y+ + Y+Y++++TYT TYTY
Sbjct: 7 VTFYIYIYIYIYIYIYIYIYIYTYT-YTYTYTY 38
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 165 IYTYVCVLTRTCAYLYVHVHTYTCMXRTYTY 73
IY Y+ + T Y Y + +TYT TYTY
Sbjct: 19 IYIYIYIYIYTYTYTYTYTYTYT-YTYTYTY 48
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 162 YTYVCVLTRTCAYLYVHVHTYTCMXRTYTYV 70
YTY T T Y Y + +TYT TY YV
Sbjct: 30 YTYTYTYTYTYTYTYTYTYTYT---YTYVYV 57
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 215 TRRYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCI 105
T Y T TY YT T VY++V+V Y Y+ +
Sbjct: 33 TYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYV 69
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 162 YTYVCVLTRTCAYLYVHVHTYTCMXRTYTYV 70
YTY T T Y+YV+V+ Y + Y YV
Sbjct: 42 YTYTYTYTYTYTYVYVYVYVYVYVY-VYVYV 71
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 162 YTYVCVLTRTCAYLYVHVHTYTCMXRTYTYVDDS 61
YTYV V Y+YV+V+ Y + Y Y+ DS
Sbjct: 52 YTYVYVYVYVYVYVYVYVYVYVYVY-IYIYLYDS 84
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYVSS 199
TY Y + + Y Y Y +V V + YVY+ Y+ S
Sbjct: 43 TYTYT-YTYTYTYVYVYVYVYVYVYVYVYVYVYVYIYIYLYDS 84
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 162 YTYVCVLTRTCAYLYVHVHTYTCMXRTYTYV 70
YTY T T Y YV+V+ Y + Y YV
Sbjct: 40 YTYTYTYTYTYTYTYVYVYVYVYVY-VYVYV 69
>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 34.7 bits (76), Expect = 0.075
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYV 193
YV VR VYVC C Y +VR + VY+ YVVYV
Sbjct: 274 YVRVRQYVVYVCVCQY-VVYVRAGQYV-VYVRVRQYVVYV 311
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYV 193
YV VR VYVC Y +V V + VY+ YVVYV
Sbjct: 301 YVRVRQYVVYVCVGQY-VVYVCVRQYV-VYVRVRQYVVYV 338
>SB_52789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 34.3 bits (75), Expect = 0.099
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -2
Query: 215 TRRYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRACXVRIRT 72
T + R R RT +C+YTR V HVHVR +T + R R R+RT
Sbjct: 76 TSDLLHGRCRVRTCVCVYTR--VRTHVHVRFHTRVRTRVRV-YTRVRT 120
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 67 VHVRIRTXHARVRMHMYV*--VRTCTCKYTHVRVYRHMYVR 183
V+ R+RT H VR H V VR T THVRV H VR
Sbjct: 92 VYTRVRT-HVHVRFHTRVRTRVRVYTRVRTHVRVRFHTRVR 131
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 91 HARVRMHMYV*VRTCTCKYTHVRVYRHM 174
H +H VRTC C YT VR + H+
Sbjct: 75 HTSDLLHGRCRVRTCVCVYTRVRTHVHV 102
>SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 67 VHVRIRTXHARVRMHMYV*VRTC--TCKYTHVRVYRH 171
V+ R+RT H RVR H V R C T THVRV H
Sbjct: 66 VYTRVRT-HVRVRFHTRVSTRVCVYTRVRTHVRVRFH 101
>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
Length = 685
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRA 93
R++ R R +T C YT +HVH Y RT+A
Sbjct: 375 RHVNARTRTQTLKCTYTHPDTQIHVHAPRYGNARTRTQA 413
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRA 93
+Y +T C YT + +HVH + C RT+A
Sbjct: 298 KYANAHTHTQTRKCTYTHPGMQMHVHAPRHANTCTRTQA 336
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTY 114
R+ R R +T+ +YT +HVH R TY
Sbjct: 502 RHAYARTRTQTHKYMYTHPDTQMHVHTRKCTY 533
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRACXVRIRTWTIRLSVNDA 42
RY R R + + C YT +HVH + R VR RT T + + A
Sbjct: 403 RYGNARTRTQAHKCTYTHPDTQMHVHALRHA-NAQTPRHANVRTRTKTRKCTYRQA 457
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 113 CTYKYAHVRVSTHTYVYIGTCTYV 184
CTY+ A+ R T TY Y TCT +
Sbjct: 452 CTYRQANTRSRTQTYKY--TCTQI 473
>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
Length = 240
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 68 STYVYVR-HMHVYVCTCTYKYAHVRVSTHTYVYIGTCTY 181
+TY Y R H+H Y+ T Y Y +R+ H Y+ I T Y
Sbjct: 149 TTYPYQRLHIHDYISTTPYSY--LRLHIHDYISILTSLY 185
>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVY 163
YVYV +++VYV Y Y +V V + YVY
Sbjct: 266 YVYV-YVYVYVYVYVYVYVYVYVYVYVYVY 294
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 176 YMCLYTRTCVYLHVHVRTYTYMCIRTRACXVRIRTW 69
Y+ +Y VY++V+V Y Y+ + A R+R W
Sbjct: 270 YVYVYVYVYVYVYVYVYVYVYVYVYGSASIDRVRKW 305
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 77 VYVRHMHVYVCTCTYKYAHVRVSTHTYVYI 166
VYV +++VYV Y Y +V V + YVY+
Sbjct: 265 VYV-YVYVYVYVYVYVYVYVYVYVYVYVYV 293
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 92 MHVYVCTCTYKYAHVRVSTHTYVYIGTCTYV 184
+ VYV Y Y +V V + YVY+ YV
Sbjct: 263 LRVYVYVYVYVYVYVYVYVYVYVYVYVYVYV 293
>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
Length = 231
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRA 93
+Y +T C YT + +HVH + C RT+A
Sbjct: 73 KYANAHTHTQTRKCTYTHPGMQMHVHAPRHANTCTRTQA 111
>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 326 IQTAHIQSSLAFRMNSVHDMVIHVTFLLIIQLEHK*ATRRYIETRHRPRTYMCLYTR 156
++T Q++LA M S + + FLL E K I TRHR + Y C R
Sbjct: 259 METLFYQANLASDMPSDSQRIQDIKFLLDEGYEDKIVIAHDIHTRHRLKKYECFAIR 315
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTY 181
T+++ ++ + CTC Y Y + T Y Y+ C Y
Sbjct: 235 TFMFALCVYAHACTCIYAY----LCTRIYAYVCACVY 267
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = -2
Query: 173 MCLYTR--TCVYLHVHVRTYTYM--CIRTRACXVRIRTWT---IRLSVNDA 42
+C+Y TC+Y ++ R Y Y+ C+ C +R+R + +RL V+ A
Sbjct: 240 LCVYAHACTCIYAYLCTRIYAYVCACVYDYVCTLRLRLFVHLRLRLCVHFA 290
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 74 YVYV-RHMHVYVCTCTYKY-AHVRVSTHTYVYIGTCTYVVYVSSQCTVSSLTCVL 232
Y Y+ ++ YVC C Y Y +R+ ++ + C + + +L C L
Sbjct: 251 YAYLCTRIYAYVCACVYDYVCTLRLRLFVHLRLRLCVHFAFALMCALAFTLICAL 305
>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
Length = 224
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -2
Query: 215 TRRYIETRHR----PRTYMCLYTRTCVYLHVHVRTYTYMCIRTRACXVRIRT 72
TR ++ TR R RT + + TRT V H +RT ++ IRTRA V IRT
Sbjct: 29 TRAHVATRTRVHVATRTRVHVATRTRV--HTAIRTRAHVAIRTRA-HVAIRT 77
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -2
Query: 215 TRRYIETRHRP----RTYMCLYTRTCVYLHVHVRTYTYMCIRTRACXVRIRT 72
TR ++ TR R RT + + TRT V HV RT + IRTRA V IRT
Sbjct: 21 TRAHVATRTRAHVATRTRVHVATRTRV--HVATRTRVHTAIRTRA-HVAIRT 69
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 218 ATRRYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRA 93
ATR + R R + + TR HV +RT ++ IRTRA
Sbjct: 42 ATRTRVHVATRTRVHTAIRTRA----HVAIRTRAHVAIRTRA 79
>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2085
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 10 SSDTRASFETVASFTDKRIVHVRIRTXHARVRMHM 114
S+DTR ET F K H+R H RVR++M
Sbjct: 1377 SADTRCQHET---FKHKGPTHIRTSVHHTRVRIYM 1408
>SB_43173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 134 VRVSTHTYVYIGTCTYVVYVSSQCT 208
VR+ T+TYVY+ C SS CT
Sbjct: 746 VRIRTYTYVYVDDCRPSASRSSACT 770
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -2
Query: 182 RTYMCLYTR--TCVYLHVHVRTYT--YMCIRTR 96
R + CLYTR C+Y H + YT + C+ TR
Sbjct: 473 RPHACLYTRPHACLYTHPYAWLYTRPHACLYTR 505
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 110 TCTYKYAHVRVSTHTYVYIGTCTYVVYVSSQCTVS 214
TCT Y THT Y T +Y S CT S
Sbjct: 3 TCTTSYTSTTSYTHTTSYTHTTSYTSTPSYTCTTS 37
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 110 TCTYKYAHVRVSTHTYVYIGTCTYVVYVSSQCTVS 214
TCT Y THT Y T +Y S CT S
Sbjct: 159 TCTTSYTCTTSYTHTTSYTCTTSYTCTTSYTCTTS 193
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 159 TYVCVLTRTCAYLYVHVHTYTC 94
+Y C + TC Y H +YTC
Sbjct: 157 SYTCTTSYTCTTSYTHTTSYTC 178
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 110 TCTYKYAHVRVSTHTYVYIGTCTYVVYVSSQCTVSSLTC 226
TCT Y T T Y T +Y + S CT +S TC
Sbjct: 129 TCTTSYTSTTSYTPTTSYTPTTSYTLTTSYTCT-TSYTC 166
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 71 TYVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTCTYVVYVSSQCTVSSLTCV 229
T V H H+ + T T+K+ + TH ++ I T T+ S T LT V
Sbjct: 393 TIVTWTHKHLTIVTWTHKHLTIVAWTHKHLTIVTWTHKHLTSGTWTHKHLTIV 445
>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 113 CTYKYAHVRVSTHTYVYIGTCTYVVYVSSQCTVSSLTCVLT 235
C AH VS+ V + + YVV S+QC VSS CV++
Sbjct: 311 CVVSSAHYVVSSAQCV-VSSAQYVVS-SAQCVVSSAQCVVS 349
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 156 YVCVLTRTCAYLYVHVHTYTCMXR 85
+ C+LTRT +Y H H++T + R
Sbjct: 626 HACILTRTPTRVYSHTHSHTRVTR 649
>SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)
Length = 198
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 209 RYIETRHRPRTYMCLYTRTCVYLHVHVRTYTYMCIRTRA 93
R+ T R +T C YT +HVH Y RT+A
Sbjct: 118 RHANTCTRTQTRKCTYTHPDTQIHVHAPRYGNARTRTQA 156
>SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)
Length = 523
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 559 LLEAYPYTVR-KSIRYV*ISSNIQH*SQFNRIIATFKHSPLQ*TLKSTTKTRRVQY 395
L E PYT R K++RY + +Q + I T + TL TTK + V+Y
Sbjct: 22 LQEGKPYTTRGKTVRYKRENRTLQEGKPYATIGKTVHYKRKNRTLPYTTKGKTVRY 77
>SB_9890| Best HMM Match : TIG (HMM E-Value=0.17)
Length = 326
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 591 IDRYCYRFSLYF*KHTLIL*GNQLDMYKFQV 499
+DRYC +F + ++ L GN DM +FQV
Sbjct: 168 VDRYCLKFFMKCNQNCLKNAGNPKDMRRFQV 198
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 74 YVYVRHMHVYVCTCTYKYAHVRVSTHTYVYIGTC-TYVVYV 193
++Y +H+ V++ TY Y + +TYVY T TY V++
Sbjct: 125 HIYDKHIRVHIYNNTYVYTS---TINTYVYTSTTNTYGVHI 162
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 184 HVRTCAYIHVRVCTYTYMCVLIRT 113
H R C +H RVCT Y ++RT
Sbjct: 2868 HYRVCT-VHYRVCTVHYRVCIVRT 2890
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,529,217
Number of Sequences: 59808
Number of extensions: 438561
Number of successful extensions: 1382
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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