Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00963
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-5|AAB93661.3|  278|Caenorhabditis elegans Hypothetical ...    31   1.1  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical...    28   5.7  

>AF016657-5|AAB93661.3|  278|Caenorhabditis elegans Hypothetical
           protein C16C4.4 protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 336 QIKNTNGSHSIFTRIQNEQCSRYGDSCDISINYSVR 229
           QIK  +G   +F R + E C   G S  I ++Y +R
Sbjct: 137 QIKRDDGFFGLFLRCEKEDCEDPGKSWSIELDYELR 172


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +1

Query: 364 SDSFRRTKKICIAHVAFLLYFLMFIVTVSV*MLLLFD*IGFNVECYLKFIHI*LISLQYK 543
           S S R T  I IA +    YFL  +  V+V +   F    + + C+L F++I  +S    
Sbjct: 24  SASLRTTNAILIAALLVSSYFLNVLFIVAVLITKSFRTTIYLMYCHLSFVNIIDLSFNIF 83

Query: 544 GMLLKVQRKTIAISVNFCFF 603
             L+ V      +S  +C F
Sbjct: 84  FALIFVANGNWNMSNGWCTF 103


>AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical
           protein Y71A12B.15 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 476 QSNNSNIQTLTVTINIKKYNKNATCAIHIFFVLRKLSD 363
           Q+ +S+I+TL+  +N+K+      C   IF  LRKL++
Sbjct: 315 QNFDSSIETLSHYLNLKREYPVQICLGEIFLQLRKLNE 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,578
Number of Sequences: 27780
Number of extensions: 321390
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)