Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00962
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XRZ1 Cluster: Putative uncharacterized protein; n=4; ...    44   0.003
UniRef50_Q1WVK1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_Q23JN3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q8I2L3 Cluster: Putative uncharacterized protein PFI146...    33   7.5  
UniRef50_Q894I7 Cluster: Phage-related protein; n=1; Clostridium...    33   9.9  

>UniRef50_Q4XRZ1 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 895

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 31/105 (29%), Positives = 52/105 (49%)
 Frame = -2

Query: 362 FC*LNSIVALEQLKCNHEMHLCNAC*FMLIL*TRCIIKREKNSTHFEY*VLIL*LSQCKY 183
           F  LN I+ LEQ    + +++ +    MLI   +C IK+ KN  H  Y  +    S+  +
Sbjct: 686 FSLLNLILNLEQTNYRNNLYILSTILLMLI--NQCKIKK-KNKPHTNYIYIKTRFSKINW 742

Query: 182 KKIEPLSHEINKYIKFICNNLVQLSNITKIAQNLALFSITKLKNN 48
           K   P+   ++K +KFI N L++    + I  N  +F  ++ K N
Sbjct: 743 KYFFPIHIYVSKNVKFISNQLIKTFQ-SNITSNYHIFCRSREKEN 786


>UniRef50_Q1WVK1 Cluster: Putative uncharacterized protein; n=1;
            Lactobacillus salivarius subsp. salivarius UCC118|Rep:
            Putative uncharacterized protein - Lactobacillus
            salivarius subsp. salivarius (strain UCC118)
          Length = 1149

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 200  LSQCKYKKIEPLSHEINKYIK--FICNNLVQLSNITKIAQNLALFSITKLKNNKIVIIEG 27
            +++ KYK +   +  INKY K  FI   LV+ S + K+A N+      K +N KI+ I  
Sbjct: 894  MTEQKYKNLLTRTDSINKYTKQSFIKRQLVETSQVVKLAANILQ---DKYRNTKIIEIRA 950

Query: 26   K 24
            +
Sbjct: 951  R 951


>UniRef50_Q23JN3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 160

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 188 KY-KKIEPLSHEINKYIKFICNNLVQLSNITKIAQNLALFSITKLKNNKI 42
           KY K I  L     + I ++C++LVQ SN+T +A N     I  L+ N++
Sbjct: 69  KYCKNITNLDFNFREGIYYLCSSLVQCSNLTNLAVNFGFNKIDDLEINEL 118


>UniRef50_Q8I2L3 Cluster: Putative uncharacterized protein PFI1460c;
           n=4; Plasmodium|Rep: Putative uncharacterized protein
           PFI1460c - Plasmodium falciparum (isolate 3D7)
          Length = 350

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 284 INRHYTNAF-HDYISIVPMLQLNLVSKMSLVIFLKYSTF 397
           I  +Y   F HD I I+P L+L ++ K S++IFL    F
Sbjct: 137 IKENYIAIFTHDIIQILPFLKLLIIQKYSILIFLSKDNF 175


>UniRef50_Q894I7 Cluster: Phage-related protein; n=1; Clostridium
           tetani|Rep: Phage-related protein - Clostridium tetani
          Length = 579

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 254 IKREKNSTHFEY*VLIL*LSQCKYKKIEPLSHEIN--KYIKFICNNLVQLSNITKIA 90
           IK +K   +F + V  L  +  KY +   + H ++  +YIK ICN L +  +IT IA
Sbjct: 409 IKNKKRGDYFAFVVESLADNDFKYVRKGEILHFVSFEEYIKHICNTLKKFEDITHIA 465


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,814,554
Number of Sequences: 1657284
Number of extensions: 10352213
Number of successful extensions: 18649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18643
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)